Versatile Functions for Working with Pedigrees

Documentation for package ‘pedigreeTools’ version 0.2

Dmat	Mendelian sampling variance
editPed	Edits a disordered or incomplete pedigree
getA	Additive relationship matrix
getAInv	Inverse of the additive relationship matrix
getASelfing	Extends the pedigree according to number of selfing cycles and also optionally computes the Additive Relationship Matrix for that pedigree.
getASubset	Subset of additive relationship matrix
getD	Mendelian sampling variance
getDInv	Mendelian sampling variance
getGenAncestors	Counts number of generations of ancestors for one subject. Use recursion.
getL	Relationship factor from a pedigree
getLInv	Inverse relationship factor from a pedigree
getT	Gene flow from a pedigree
getTInv	Inverse gene flow from a pedigree
inbreeding	Inbreeding coefficients from a pedigree
ped2DF	Convert a pedigree to a data frame
pedigree	Constructor for pedigree objects
pedigree-class	Pedigree class
pedinbred-class	Pedigree class
prunePed	Subsets a pedigree for a specified vector of individuals up to a specified number of previous generations using recursion.
relfactor	Relationship factor from a pedigree
relfactorInv	Inverse relationship factor from a pedigree