Penalised Maximum Likelihood Estimation for Hidden Semi-Markov Models

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Documentation for package ‘PHSMM’ version 1.0

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dbern Bernoulli distribution
decodeHSMM State decoding
muskox Muskox movement data
n2wHSMM Parameter transformation from natural to working parameters
nll_Rcpp Negative log-likelihood evaluation
npllHSMM negative penalised HSMM log-likelihood function
pbern Bernoulli distribution
plotDw Plot of the estimated HSMM dwell-time distributions.
pmleHSMM HSMM penalised maximum likelihood estimation
pseudoResHSMM HSMM pseudo-residuals
tpmHMM Tranistion probability matrix of the HMM representation
w2nHSMM Parameter transformation from working to natural parameters