Routines for Performing Empirical Calibration of Observational Study Estimates

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Documentation for package ‘EmpiricalCalibration’ version 3.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calibrateConfidenceInterval	Calibrate confidence intervals
calibrateLlr	Calibrate the log likelihood ratio
calibrateP	Calibrate the p-value
calibrateP.mcmcNull	Calibrate the p-value
calibrateP.null	Calibrate the p-value
caseControl	Odds ratios from a case-control design
cohortMethod	Relative risks from a new-user cohort design
compareEase	Compare EASE of correlated sets of estimates
computeCvBinomial	Compute critical values for Binomial data
computeCvPoisson	Compute critical values for Poisson data
computeCvPoissonRegression	Compute critical values for Poisson regression data
computeExpectedAbsoluteSystematicError	Compute the expected absolute systematic error
computeTraditionalCi	Compute the (traditional) confidence interval
computeTraditionalP	Compute the (traditional) p-value
convertNullToErrorModel	Convert empirical null distribution to systematic error model
evaluateCiCalibration	Evaluate confidence interval calibration
fitMcmcNull	Fit the null distribution using MCMC
fitNull	Fit the null distribution
fitNullNonNormalLl	Fit the null distribution using non-normal log-likelihood approximations
fitSystematicErrorModel	Fit a systematic error model
grahamReplication	Relative risks from an adjusted new-user cohort design
plotCalibration	Create a calibration plot
plotCalibrationEffect	Plot the effect of the calibration
plotCiCalibration	Create a confidence interval calibration plot
plotCiCalibrationEffect	Plot the effect of the CI calibration
plotCiCoverage	Create a confidence interval coverage plot
plotErrorModel	Plot the systematic error model
plotExpectedType1Error	Plot the expected type 1 error as a function of standard error
plotForest	Create a forest plot
plotMcmcTrace	Plot the MCMC trace
plotTrueAndObserved	Plot true and observed values
sccs	Incidence rate ratios from Self-Controlled Case Series
simulateControls	Simulate (negative) controls
simulateMaxSprtData	Simulate survival data for MaxSPRT computation
southworthReplication	Relative risks from an unadjusted new-user cohort design