Routines for Performing Empirical Calibration of Observational Study Estimates


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Documentation for package ‘EmpiricalCalibration’ version 3.1.2

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calibrateConfidenceInterval Calibrate confidence intervals
calibrateLlr Calibrate the log likelihood ratio
calibrateP Calibrate the p-value
calibrateP.mcmcNull Calibrate the p-value
calibrateP.null Calibrate the p-value
caseControl Odds ratios from a case-control design
cohortMethod Relative risks from a new-user cohort design
compareEase Compare EASE of correlated sets of estimates
computeCvBinomial Compute critical values for Binomial data
computeCvPoisson Compute critical values for Poisson data
computeCvPoissonRegression Compute critical values for Poisson regression data
computeExpectedAbsoluteSystematicError Compute the expected absolute systematic error
computeTraditionalCi Compute the (traditional) confidence interval
computeTraditionalP Compute the (traditional) p-value
convertNullToErrorModel Convert empirical null distribution to systematic error model
evaluateCiCalibration Evaluate confidence interval calibration
fitMcmcNull Fit the null distribution using MCMC
fitNull Fit the null distribution
fitNullNonNormalLl Fit the null distribution using non-normal log-likelihood approximations
fitSystematicErrorModel Fit a systematic error model
grahamReplication Relative risks from an adjusted new-user cohort design
plotCalibration Create a calibration plot
plotCalibrationEffect Plot the effect of the calibration
plotCiCalibration Create a confidence interval calibration plot
plotCiCalibrationEffect Plot the effect of the CI calibration
plotCiCoverage Create a confidence interval coverage plot
plotErrorModel Plot the systematic error model
plotExpectedType1Error Plot the expected type 1 error as a function of standard error
plotForest Create a forest plot
plotMcmcTrace Plot the MCMC trace
plotTrueAndObserved Plot true and observed values
sccs Incidence rate ratios from Self-Controlled Case Series
simulateControls Simulate (negative) controls
simulateMaxSprtData Simulate survival data for MaxSPRT computation
southworthReplication Relative risks from an unadjusted new-user cohort design