Estimate Migratory Connectivity for Migratory Animals

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Documentation for package ‘MigConnectivity’ version 0.4.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

abundExamples	Example relative abundance estimates from simulated data
calcMantel	Calculate Mantel correlation (rM) from points and/or distances.
calcMC	Migratory connectivity strength function
calcPsi	Calculate psi (transition probabilities between sites in two phases of the annual cycle)
calcStrength	Migratory connectivity strength function
calcTransition	Calculate psi (transition probabilities between sites in two phases of the annual cycle)
diffCorr	Pairwise differences between two or more independent Mantel correlation estimates
diffMantel	Pairwise differences between two or more independent Mantel correlation estimates
diffMC	Pairwise differences between two or more independent MC estimates
diffStrength	Pairwise differences between two or more independent MC estimates
distFromPos	Distance matrix from position matrix
estCorr	Estimate Mantel correlation (rM) from geolocator, GPS, and/or raster data.
estMantel	Estimate Mantel correlation (rM) from geolocator, GPS, and/or raster data.
estMC	Estimate migratory connectivity
estPsi	Estimate psi (transition probabilities between locations in two phases of the annual cycle)
estStrength	Estimate MC, migratory connectivity strength
estTransition	Estimate psi (transition probabilities between locations in two phases of the annual cycle)
getCMRexample	Grab (from https://github.com/SMBC-NZP/MigConnectivity) example RMark transition probability estimates obtained from simulated data
getIsoMap	Get Isoscape map getIsoMap
isoAssign	Generate probabilistic isotope assignments
MigConnectivity	MigConnectivity: A package for quantifying migratory connectivity pattern and strength for migratory animals
modelCountDataJAGS	Estimates population-level relative abundance from count data
OVENdata	Ovenbird light-level geolocator and GPS necessary data
plot.estMigConnectivity	Basic plot function for estMigConnectivity objects
plot.intrinsicAssign	Basic plot function for the different isoAssign outputs
projections	Map projections
reversePi	Reverse transition probabilities and origin relative abundance
reversePsiRelAbund	Reverse transition probabilities and origin relative abundance
reverseTransition	Reverse transition probabilities and origin relative abundance
reverseTransitionRelAbund	Reverse transition probabilities and origin relative abundance
sampleOriginDist	Example origin and target site positions and distances on a 2-D plane
sampleOriginN	Example origin site abundances and relative abundances
sampleOriginPos	Example origin and target site positions and distances on a 2-D plane
sampleOriginRelN	Example origin site abundances and relative abundances
samplePsis	Example transition probabilities (psis) between origin and target sites
sampleTargetDist	Example origin and target site positions and distances on a 2-D plane
sampleTargetPos	Example origin and target site positions and distances on a 2-D plane
simCMRData	Simulate capture-mark-reencounter (CMR) migratory movement data
simCountData	Simulates Breeding Bird Survey-style count data
simGLData	Simulate geolocator (GL) migratory movement data
simMove	Simulates position of birds by individual, season, year, and month.
simProbData	Simulate Dirichlet-based probability table data
simTelemetryData	Simulate telemetry/GPS data
weightAssign	Calculate Weights for Isotope Assignments weightAssign