Simulate Expression Data from 'igraph' Networks

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Documentation for package ‘graphsim’ version 1.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

graphsim-package	The graphsim package
generate_expression	Generate Simulated Expression
generate_expression_mat	Generate Simulated Expression
graphsim	The graphsim package
make_adjmatrix	Generate Adjacency Matrix
make_adjmatrix_graph	Generate Adjacency Matrix
make_commonlink	Generate Common Link Matrix
make_commonlink_adjmat	Generate Common Link Matrix
make_commonlink_graph	Generate Common Link Matrix
make_distance	Generate Distance Matrix
make_distance_adjmat	Generate Distance Matrix
make_distance_comm	Generate Distance Matrix
make_distance_graph	Generate Distance Matrix
make_distance_laplacian	Generate Distance Matrix
make_laplacian	Generate Laplacian Matrix
make_laplacian_adjmat	Generate Laplacian Matrix
make_laplacian_graph	Generate Laplacian Matrix
make_relationship	Generate Distance Matrix
make_sigma	Generate Sigma (Sigma) Matrix
make_sigma_mat_adjmat	Generate Sigma (Sigma) Matrix
make_sigma_mat_comm	Generate Sigma (Sigma) Matrix
make_sigma_mat_dist_adjmat	Generate Sigma (Sigma) Matrix
make_sigma_mat_dist_graph	Generate Sigma (Sigma) Matrix
make_sigma_mat_graph	Generate Sigma (Sigma) Matrix
make_sigma_mat_laplacian	Generate Sigma (Sigma) Matrix
make_state	Make State Matrix
make_state_matrix	Make State Matrix
Pi3K_AKT_graph	PI3K/AKT activation
Pi3K_graph	PI3K Cascade
plot.directed	Extensions to igraph for Customising plots
plot_directed	Extensions to igraph for Customising plots
RAF_MAP_graph	#' RAF/MAP kinase cascade
TGFBeta_Smad_graph	TGF-beta receptor signaling activates SMADs