R-Client for Interacting with the 'UCSF Data Library'

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Documentation for package ‘magmaR’ version 1.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

authentication-and-environments	Starting out and working with different Etna environments
magmaRset	Set up your magma environment and authentication
query	Search-like function that can obtain linked data from distinct models.
retrieve	Download data from magma as a tsv, and convert to a data.frame
retrieveAttributes	Helper functions that utilize special cases of magma /retrieve
retrieveIds	Helper functions that utilize special cases of magma /retrieve
retrieveJSON	Download data from magma as a json, and convert to a list
retrieveMatrix	Download data from magma that is stored as a matrix
retrieveMetadata	Download data from magma of one model, but transformed into the shape of a different model's records.
retrieveModels	Helper functions that utilize special cases of magma /retrieve
retrieveProjects	Helper function that retrieves all the projectName options which a user has access to, from janus.
retrieveTemplate	Helper functions that utilize special cases of magma /retrieve
retrieve_SpecialCases	Helper functions that utilize special cases of magma /retrieve
updateFromDF	Easier to use wrapper of 'updateValues'
updateMatrix	A matrix-specific wrapper of 'updateValues'
updateValues	Analogous to the '/update' function of magma