AccSGD |
AccSGD |
AdaBound |
AdaBound |
Adamax |
Adamax |
anova.sjSDM |
Anova |
bioticStruct |
biotic structure |
checkModel |
check model check model and rebuild if necessary |
check_module |
check module |
coef.sjSDM |
Return coefficients from a fitted sjSDM model |
DiffGrad |
DiffGrad |
DNN |
Non-linear model (deep neural network) of environmental responses |
generateSpatialEV |
Generate spatial eigenvectors |
getCor |
getCor |
getCor.sjSDM |
getCor |
getCov |
getCov |
getCov.sjSDM |
getCov |
getImportance |
getImportance |
getSe |
Post hoc calculation of standard errors |
getWeights |
Get weights |
getWeights.sjSDM |
Get weights |
importance |
importance |
installation_help |
Installation help |
install_diagnostic |
install diagnostic |
install_sjSDM |
Install sjSDM and its dependencies |
is_torch_available |
is_torch_available |
linear |
Linear model of environmental response |
logLik.sjSDM |
Extract negative-log-Likelihood from a fitted sjSDM model |
madgrad |
madgrad |
new_image |
new_image function |
plot.sjSDM |
Coefficients plot |
plot.sjSDM.DNN |
Training history |
plot.sjSDManova |
Plot anova results |
plot.sjSDMimportance |
Plot importance |
plot.sjSDM_cv |
Plot elastic net tuning |
plotInternalStructure |
Plot internal metacommunity structure |
plotsjSDMcoef |
Internal coefficients plot |
predict.sjSDM |
Predict from a fitted sjSDM model |
print.bioticStruct |
Print a bioticStruct object |
print.DNN |
Print a DNN object |
print.linear |
Print a linear object |
print.sjSDM |
Print a fitted sjSDM model |
print.sjSDManova |
Print sjSDM anova |
print.sjSDMimportance |
Print importance |
print.sjSDM_cv |
Print a fitted sjSDM_cv model |
RMSprop |
RMSprop |
Rsquared |
R-squared |
setWeights |
Set weights |
setWeights.sjSDM |
Set weights |
SGD |
SGD |
simulate.sjSDM |
Generates simulations from sjSDM model |
simulate_SDM |
Simulate joint Species Distribution Models |
sjSDM |
Fitting scalable joint Species Distribution Models (sjSDM) |
sjSDM.tune |
Fitting scalable joint Species Distribution Models (sjSDM) |
sjSDMControl |
sjSDM control object |
sjSDM_cv |
Cross validation of elastic net tuning |
summary.sjSDM |
Return summary of a fitted sjSDM model |
summary.sjSDM_cv |
Return summary of a fitted sjSDM_cv model |
update.sjSDM |
Update and re-fit a model call |