Score Taxon-Level IgA Binding in IgA-Seq Experiments

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Documentation for package ‘IgAScores’ version 0.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

igaprobability	IgA Probability
igaprobabilityratio	IgA Probability Ratio
igascores	Generate various scores for IgA binding in IgA-Seq experiments
kauindex	Kau Index
oligoMeta	Metadata for the OligoMM12-Colitis experiment used as an example in the IgAScores package
oligoSpecies	Species level counts for the OligoMM12-Colitis experiment used as an example in the IgAScores package
palmindex	Palm Index
relabund	Relative Abundance from Counts
simulateigaseq	Simulate an IgA-Seq dataset from a pre-defined set of IgA-binding probabilities
taxnamesplit	Extract name at a given taxonomic level from a full name in the "p__;c__;o__;f__;g__;s__" format