Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
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Documentation for package ‘oro.nifti’ version 0.11.4
- DESCRIPTION file.
- Code demos. Use demo() to run them.
- Package NEWS.
Help Pages
A B C D E F G H I M N O P Q R S T U V W X Z misc
-- A --
| afni-class | Class "afni" |
| anlz | Constructor for Analyze |
| anlz-class | Class "anlz" |
| anlz-nifti-ops | Operations for Objects in the ANALYZE and NIfTI classes |
| as-method | Force an Object to Belong to the ANALYZE or NIfTI Class |
| as.anlz | as.anlz |
| as.nifti | as.nifti |
| as<--method | Force an Object to Belong to the ANALYZE or NIfTI Class |
| Audit Trails | Facilitate the Creation and Modification of Audit Trails |
| audit.trail | Extract or Replace NIfTI Audit Trail |
| audit.trail-method | Extract or Replace NIfTI Audit Trail |
| audit.trail-methods | Extract or Replace NIfTI Audit Trail |
| audit.trail<- | Extract or Replace NIfTI Audit Trail |
| audit.trail<--method | Extract or Replace NIfTI Audit Trail |
| aux.file | Extract Image Attribute 'aux_file' |
| aux.file-method | Extract Image Attribute 'aux_file' |
| aux.file<- | Extract Image Attribute 'aux_file' |
| aux.file<--method | Extract Image Attribute 'aux_file' |
| aux_file | Extract Image Attribute 'aux_file' |
| aux_file-method | Extract Image Attribute 'aux_file' |
| aux_file-methods | Extract Image Attribute 'aux_file' |
| aux_file-methods, | Extract Image Attribute 'aux_file' |
| aux_file<- | Extract Image Attribute 'aux_file' |
| aux_file<--method | Extract Image Attribute 'aux_file' |
-- B --
| bitpix | Extract Image Attribute 'bitpix' |
| bitpix-method | Extract Image Attribute 'bitpix' |
| bitpix-methods | Extract Image Attribute 'bitpix' |
| bitpix-methods, | Extract Image Attribute 'bitpix' |
| bitpix<- | Extract Image Attribute 'bitpix' |
| bitpix<--method | Extract Image Attribute 'bitpix' |
| blend | Merge Two NIfTI or ANALYZE Volumes |
| blend,anlz,anlz-methods | Merge Two NIfTI or ANALYZE Volumes |
| blend,anlz,nifti-methods | Merge Two NIfTI or ANALYZE Volumes |
| blend,nifti,anlz-methods | Merge Two NIfTI or ANALYZE Volumes |
| blend,nifti,nifti-methods | Merge Two NIfTI or ANALYZE Volumes |
| blend-method | Merge Two NIfTI or ANALYZE Volumes |
| blendVolumes | Merge Two NIfTI or ANALYZE Volumes |
-- C --
| cal.max | Extract Image Attribute 'cal_max' |
| cal.max-method | Extract Image Attribute 'cal_max' |
| cal.max<- | Extract Image Attribute 'cal_max' |
| cal.max<--method | Extract Image Attribute 'cal_max' |
| cal.min | Extract Image Attribute 'cal_min' |
| cal.min-method | Extract Image Attribute 'cal_min' |
| cal.min<- | Extract Image Attribute 'cal_min' |
| cal.min<--method | Extract Image Attribute 'cal_min' |
| cal.units | Extract Image Attribute 'cal_units' |
| cal.units-method | Extract Image Attribute 'cal_units' |
| cal.units<- | Extract Image Attribute 'cal_units' |
| cal.units<--method | Extract Image Attribute 'cal_units' |
| calibrateImage | Set Minimum/Maximum Values for NIfTI data |
| cal_img | Set Minimum/Maximum Values for NIfTI data |
| cal_max | Extract Image Attribute 'cal_max' |
| cal_max-method | Extract Image Attribute 'cal_max' |
| cal_max-methods | Extract Image Attribute 'cal_max' |
| cal_max-methods, | Extract Image Attribute 'cal_max' |
| cal_max<- | Extract Image Attribute 'cal_max' |
| cal_max<--method | Extract Image Attribute 'cal_max' |
| cal_min | Extract Image Attribute 'cal_min' |
| cal_min-method | Extract Image Attribute 'cal_min' |
| cal_min-methods | Extract Image Attribute 'cal_min' |
| cal_min-methods, | Extract Image Attribute 'cal_min' |
| cal_min<- | Extract Image Attribute 'cal_min' |
| cal_min<--method | Extract Image Attribute 'cal_min' |
| cal_units | Extract Image Attribute 'cal_units' |
| cal_units-method | Extract Image Attribute 'cal_units' |
| cal_units-methods | Extract Image Attribute 'cal_units' |
| cal_units-methods, | Extract Image Attribute 'cal_units' |
| cal_units<- | Extract Image Attribute 'cal_units' |
| cal_units<--method | Extract Image Attribute 'cal_units' |
| coerce-method | Force an Object to Belong to the ANALYZE or NIfTI Class |
| coerce-methods | Force an Object to Belong to the ANALYZE or NIfTI Class |
| coerce<--method | Force an Object to Belong to the ANALYZE or NIfTI Class |
| compressed | Extract Image Attribute 'compressed' |
| compressed-method | Extract Image Attribute 'compressed' |
| compressed-methods | Extract Image Attribute 'compressed' |
| compressed-methods, | Extract Image Attribute 'compressed' |
| compressed<- | Extract Image Attribute 'compressed' |
| compressed<--method | Extract Image Attribute 'compressed' |
| Convert ANALYZE Codes | Convert ANALYZE Codes |
| Convert NIfTI Codes | Convert NIfTI Codes |
| convert.bitpix | Convert NIfTI Codes |
| convert.bitpix.anlz | Convert ANALYZE Codes |
| convert.datatype | Convert NIfTI Codes |
| convert.datatype.anlz | Convert ANALYZE Codes |
| convert.form | Convert NIfTI Codes |
| convert.intent | Convert NIfTI Codes |
| convert.orient.anlz | Convert ANALYZE Codes |
| convert.scene | Convert AFNI data codes |
| convert.slice | Convert NIfTI Codes |
| convert.units | Convert NIfTI Codes |
-- D --
| data.type | Extract Image Attribute 'data_type' |
| data.type-method | Extract Image Attribute 'data_type' |
| data.type<- | Extract Image Attribute 'data_type' |
| data.type<--method | Extract Image Attribute 'data_type' |
| datatype | Extract Image Attribute 'datatype' |
| datatype-method | Extract Image Attribute 'data_type' |
| datatype-method | Extract Image Attribute 'datatype' |
| datatype-methods | Extract Image Attribute 'datatype' |
| datatype-methods, | Extract Image Attribute 'datatype' |
| datatype<- | Extract Image Attribute 'datatype' |
| datatype<--method | Extract Image Attribute 'datatype' |
| data_type | Extract Image Attribute 'data_type' |
| data_type-method | Extract Image Attribute 'data_type' |
| data_type-methods | Extract Image Attribute 'data_type' |
| data_type-methods, | Extract Image Attribute 'data_type' |
| data_type<- | Extract Image Attribute 'data_type' |
| data_type<--method | Extract Image Attribute 'data_type' |
| db.name | Extract Image Attribute 'db_name' |
| db.name-method | Extract Image Attribute 'db_name' |
| db.name<- | Extract Image Attribute 'db_name' |
| db.name<--method | Extract Image Attribute 'db_name' |
| db_name | Extract Image Attribute 'db_name' |
| db_name-method | Extract Image Attribute 'db_name' |
| db_name-methods | Extract Image Attribute 'db_name' |
| db_name-methods, | Extract Image Attribute 'db_name' |
| db_name<- | Extract Image Attribute 'db_name' |
| db_name<--method | Extract Image Attribute 'db_name' |
| descrip | Extract Image Attribute 'descrip' |
| descrip-method | Extract Image Attribute 'descrip' |
| descrip-methods | Extract Image Attribute 'descrip' |
| descrip-methods, | Extract Image Attribute 'descrip' |
| descrip<- | Extract Image Attribute 'descrip' |
| descrip<--method | Extract Image Attribute 'descrip' |
| dim2freq | Bitwise Conversion Subroutines |
| dim2phase | Bitwise Conversion Subroutines |
| dim2slice | Bitwise Conversion Subroutines |
| dim_ | Extract Image Attribute 'dim_' |
| dim_-method | Extract Image Attribute 'dim_' |
| dim_-methods | Extract Image Attribute 'dim_' |
| dim_-methods, | Extract Image Attribute 'dim_' |
| dim_<- | Extract Image Attribute 'dim_' |
| dim_<--method | Extract Image Attribute 'dim_' |
| dim_info | Extract Image Attribute 'dim_info' |
| dim_info-method | Extract Image Attribute 'dim_info' |
| dim_info-methods | Extract Image Attribute 'dim_info' |
| dim_info-methods, | Extract Image Attribute 'dim_info' |
| dim_info<- | Extract Image Attribute 'dim_info' |
| dim_info<--method | Extract Image Attribute 'dim_info' |
| dim_un0 | Extract Image Attribute 'dim_un0' |
| dim_un0-method | Extract Image Attribute 'dim_un0' |
| dim_un0-methods | Extract Image Attribute 'dim_un0' |
| dim_un0-methods, | Extract Image Attribute 'dim_un0' |
| dim_un0<- | Extract Image Attribute 'dim_un0' |
| dim_un0<--method | Extract Image Attribute 'dim_un0' |
| dropImageDimension | Drop Image Dimension |
| drop_img_dim | Drop Image Dimension |
-- E --
| enableAuditTrail | Facilitate the Creation and Modification of Audit Trails |
| exp_date | Extract Image Attribute 'exp_date' |
| exp_date-method | Extract Image Attribute 'exp_date' |
| exp_date-methods | Extract Image Attribute 'exp_date' |
| exp_date-methods, | Extract Image Attribute 'exp_date' |
| exp_date<- | Extract Image Attribute 'exp_date' |
| exp_date<--method | Extract Image Attribute 'exp_date' |
| exp_time | Extract Image Attribute 'exp_time' |
| exp_time-method | Extract Image Attribute 'exp_time' |
| exp_time-methods | Extract Image Attribute 'exp_time' |
| exp_time-methods, | Extract Image Attribute 'exp_time' |
| exp_time<- | Extract Image Attribute 'exp_time' |
| exp_time<--method | Extract Image Attribute 'exp_time' |
| extender | Extract Image Attribute 'extender' |
| extender-method | Extract Image Attribute 'extender' |
| extender-methods | Extract Image Attribute 'extender' |
| extender-methods, | Extract Image Attribute 'extender' |
| extender<- | Extract Image Attribute 'extender' |
| extender<--method | Extract Image Attribute 'extender' |
| extents | Extract Image Attribute 'extents' |
| extents-method | Extract Image Attribute 'extents' |
| extents-methods | Extract Image Attribute 'extents' |
| extents-methods, | Extract Image Attribute 'extents' |
| extents<- | Extract Image Attribute 'extents' |
| extents<--method | Extract Image Attribute 'extents' |
-- F --
| field.skip | Extract Image Attribute 'field_skip' |
| field.skip-method | Extract Image Attribute 'field_skip' |
| field.skip<- | Extract Image Attribute 'field_skip' |
| field.skip<--method | Extract Image Attribute 'field_skip' |
| field_skip | Extract Image Attribute 'field_skip' |
| field_skip-method | Extract Image Attribute 'field_skip' |
| field_skip-methods | Extract Image Attribute 'field_skip' |
| field_skip-methods, | Extract Image Attribute 'field_skip' |
| field_skip<- | Extract Image Attribute 'field_skip' |
| field_skip<--method | Extract Image Attribute 'field_skip' |
| funused1 | Extract Image Attribute 'funused1' |
| funused1-method | Extract Image Attribute 'funused1' |
| funused1-methods | Extract Image Attribute 'funused1' |
| funused1-methods, | Extract Image Attribute 'funused1' |
| funused1<- | Extract Image Attribute 'funused1' |
| funused1<--method | Extract Image Attribute 'funused1' |
| funused2 | Extract Image Attribute 'funused2' |
| funused2-method | Extract Image Attribute 'funused2' |
| funused2-methods | Extract Image Attribute 'funused2' |
| funused2-methods, | Extract Image Attribute 'funused2' |
| funused2<- | Extract Image Attribute 'funused2' |
| funused2<--method | Extract Image Attribute 'funused2' |
| funused3 | Extract Image Attribute 'funused3' |
| funused3-method | Extract Image Attribute 'funused3' |
| funused3-methods | Extract Image Attribute 'funused3' |
| funused3-methods, | Extract Image Attribute 'funused3' |
| funused3<- | Extract Image Attribute 'funused3' |
| funused3<--method | Extract Image Attribute 'funused3' |
-- G --
| generated | Extract Image Attribute 'generated' |
| generated-method | Extract Image Attribute 'generated' |
| generated-methods | Extract Image Attribute 'generated' |
| generated-methods, | Extract Image Attribute 'generated' |
| generated<- | Extract Image Attribute 'generated' |
| generated<--method | Extract Image Attribute 'generated' |
| getLastCallWithName | Facilitate the Creation and Modification of Audit Trails |
| glmax | Extract Image Attribute 'glmax' |
| glmax-method | Extract Image Attribute 'glmax' |
| glmax-methods | Extract Image Attribute 'glmax' |
| glmax-methods, | Extract Image Attribute 'glmax' |
| glmax<- | Extract Image Attribute 'glmax' |
| glmax<--method | Extract Image Attribute 'glmax' |
| glmin | Extract Image Attribute 'glmin' |
| glmin-method | Extract Image Attribute 'glmin' |
| glmin-methods | Extract Image Attribute 'glmin' |
| glmin-methods, | Extract Image Attribute 'glmin' |
| glmin<- | Extract Image Attribute 'glmin' |
| glmin<--method | Extract Image Attribute 'glmin' |
-- H --
| hist_un0 | Extract Image Attribute 'hist_un0' |
| hist_un0-method | Extract Image Attribute 'hist_un0' |
| hist_un0-methods | Extract Image Attribute 'hist_un0' |
| hist_un0-methods, | Extract Image Attribute 'hist_un0' |
| hist_un0<- | Extract Image Attribute 'hist_un0' |
| hist_un0<--method | Extract Image Attribute 'hist_un0' |
| hkey.un0 | Extract Image Attribute 'hkey_un0' |
| hkey.un0-method | Extract Image Attribute 'hkey_un0' |
| hkey.un0<- | Extract Image Attribute 'hkey_un0' |
| hkey.un0<--method | Extract Image Attribute 'hkey_un0' |
| hkey_un0 | Extract Image Attribute 'hkey_un0' |
| hkey_un0-method | Extract Image Attribute 'hkey_un0' |
| hkey_un0-methods | Extract Image Attribute 'hkey_un0' |
| hkey_un0-methods, | Extract Image Attribute 'hkey_un0' |
| hkey_un0<- | Extract Image Attribute 'hkey_un0' |
| hkey_un0<--method | Extract Image Attribute 'hkey_un0' |
| hotmetal | Hot Metal Color Table |
-- I --
| image-method | Methods for Function 'image' |
| image-methods | Methods for Function 'image' |
| image.nifti | Methods for Function 'image' |
| img_data | Extract Image Attribute '.Data' |
| img_data-method | Extract Image Attribute '.Data' |
| img_data-methods | Extract Image Attribute '.Data' |
| img_data-methods, | Extract Image Attribute '.Data' |
| img_data<- | Extract Image Attribute '.Data' |
| img_data<--method | Extract Image Attribute '.Data' |
| img_length | Gets Image Length in Each Dimension |
| integerTranslation | integerTranslation |
| intent.code | Extract Image Attribute 'intent_code' |
| intent.code-method | Extract Image Attribute 'intent_code' |
| intent.code<- | Extract Image Attribute 'intent_code' |
| intent.code<--method | Extract Image Attribute 'intent_code' |
| intent.name | Extract Image Attribute 'intent_name' |
| intent.name-method | Extract Image Attribute 'intent_name' |
| intent.name<- | Extract Image Attribute 'intent_name' |
| intent.name<--method | Extract Image Attribute 'intent_name' |
| intent.p1 | Extract Image Attribute 'intent_p1' |
| intent.p1-method | Extract Image Attribute 'intent_p1' |
| intent.p1<- | Extract Image Attribute 'intent_p1' |
| intent.p1<--method | Extract Image Attribute 'intent_p1' |
| intent.p2 | Extract Image Attribute 'intent_p2' |
| intent.p2-method | Extract Image Attribute 'intent_p2' |
| intent.p2<- | Extract Image Attribute 'intent_p2' |
| intent.p2<--method | Extract Image Attribute 'intent_p2' |
| intent.p3 | Extract Image Attribute 'intent_p3' |
| intent.p3-method | Extract Image Attribute 'intent_p3' |
| intent.p3<- | Extract Image Attribute 'intent_p3' |
| intent.p3<--method | Extract Image Attribute 'intent_p3' |
| intent_code | Extract Image Attribute 'intent_code' |
| intent_code-method | Extract Image Attribute 'intent_code' |
| intent_code-methods | Extract Image Attribute 'intent_code' |
| intent_code-methods, | Extract Image Attribute 'intent_code' |
| intent_code<- | Extract Image Attribute 'intent_code' |
| intent_code<--method | Extract Image Attribute 'intent_code' |
| intent_name | Extract Image Attribute 'intent_name' |
| intent_name-method | Extract Image Attribute 'intent_name' |
| intent_name-methods | Extract Image Attribute 'intent_name' |
| intent_name-methods, | Extract Image Attribute 'intent_name' |
| intent_name<- | Extract Image Attribute 'intent_name' |
| intent_name<--method | Extract Image Attribute 'intent_name' |
| intent_p1 | Extract Image Attribute 'intent_p1' |
| intent_p1-method | Extract Image Attribute 'intent_p1' |
| intent_p1-methods | Extract Image Attribute 'intent_p1' |
| intent_p1-methods, | Extract Image Attribute 'intent_p1' |
| intent_p1<- | Extract Image Attribute 'intent_p1' |
| intent_p1<--method | Extract Image Attribute 'intent_p1' |
| intent_p2 | Extract Image Attribute 'intent_p2' |
| intent_p2-method | Extract Image Attribute 'intent_p2' |
| intent_p2-methods | Extract Image Attribute 'intent_p2' |
| intent_p2-methods, | Extract Image Attribute 'intent_p2' |
| intent_p2<- | Extract Image Attribute 'intent_p2' |
| intent_p2<--method | Extract Image Attribute 'intent_p2' |
| intent_p3 | Extract Image Attribute 'intent_p3' |
| intent_p3-method | Extract Image Attribute 'intent_p3' |
| intent_p3-methods | Extract Image Attribute 'intent_p3' |
| intent_p3-methods, | Extract Image Attribute 'intent_p3' |
| intent_p3<- | Extract Image Attribute 'intent_p3' |
| intent_p3<--method | Extract Image Attribute 'intent_p3' |
| internalImage | "internalImage" class |
| internalImage-class | "internalImage" class |
| inverseReorient | Reorient Image using NIfTI header |
| invertIntegerTranslation | integerTranslation |
| is.afni | check object |
| is.anlz | check object |
| is.nifti | check object |
| is.niftiExtension | check object |
-- M --
| magic | Extract Image Attribute 'magic' |
| magic-method | Extract Image Attribute 'magic' |
| magic-methods | Extract Image Attribute 'magic' |
| magic-methods, | Extract Image Attribute 'magic' |
| magic<- | Extract Image Attribute 'magic' |
| magic<--method | Extract Image Attribute 'magic' |
-- N --
| newAuditTrail | Facilitate the Creation and Modification of Audit Trails |
| nifti | Constructor for NIfTI |
| nifti-class | Class "nifti" |
| nifti-operators | Operations for NIfTI Objects |
| niftiAuditTrail-class | Class "niftiAuditTrail" |
| niftiAuditTrailCreated | Facilitate the Creation and Modification of Audit Trails |
| niftiAuditTrailEvent | Facilitate the Creation and Modification of Audit Trails |
| niftiAuditTrailSystemNode | Facilitate the Creation and Modification of Audit Trails |
| niftiAuditTrailSystemNodeEvent | Facilitate the Creation and Modification of Audit Trails |
| niftiAuditTrailToExtension | Facilitate the Creation and Modification of Audit Trails |
| niftiExtension-class | Class "niftiExtension" |
| niftiExtensionSection-class | Class "niftiExtensionSection" |
| niftiExtensionToAuditTrail | Facilitate the Creation and Modification of Audit Trails |
| niftiImage | "niftiImage" class |
| niftiImage-class | "niftiImage" class |
| nifti_assign-methods | Methods for Function [<- in Package 'base' |
| nifti_header | readNIfTI |
| nii2oro | Convert RNifti niftiImage to oro.nifti nifti object |
| NSLI | Dimension Accessor Functions |
| nsli | Dimension Accessor Functions |
| NTIM | Dimension Accessor Functions |
| ntim | Dimension Accessor Functions |
-- O --
| omax | Extract Image Attribute 'omax' |
| omax-method | Extract Image Attribute 'omax' |
| omax-methods | Extract Image Attribute 'omax' |
| omax-methods, | Extract Image Attribute 'omax' |
| omax<- | Extract Image Attribute 'omax' |
| omax<--method | Extract Image Attribute 'omax' |
| omin | Extract Image Attribute 'omin' |
| omin-method | Extract Image Attribute 'omin' |
| omin-methods | Extract Image Attribute 'omin' |
| omin-methods, | Extract Image Attribute 'omin' |
| omin<- | Extract Image Attribute 'omin' |
| omin<--method | Extract Image Attribute 'omin' |
| onefile | Creates the 'onefile' Specification for NIfTI |
| Ops-method | Operations for Objects in the ANALYZE and NIfTI classes |
| Ops-method | Operations for NIfTI Objects |
| orient | Extract Image Attribute 'orient' |
| orient-method | Extract Image Attribute 'orient' |
| orient-methods | Extract Image Attribute 'orient' |
| orient-methods, | Extract Image Attribute 'orient' |
| orient<- | Extract Image Attribute 'orient' |
| orient<--method | Extract Image Attribute 'orient' |
| orientation-methods | Extract NIfTI 3D Image Orientation |
| origin | Extract Image Attribute 'origin' |
| origin-method | Extract Image Attribute 'origin' |
| origin-methods | Extract Image Attribute 'origin' |
| origin-methods, | Extract Image Attribute 'origin' |
| origin<- | Extract Image Attribute 'origin' |
| origin<--method | Extract Image Attribute 'origin' |
| oro.nifti.info | Facilitate the Creation and Modification of Audit Trails |
| oro2nii | Convert oro.nifti nifti to RNifti niftiImage object |
| orthographic | Methods for Function 'orthographic' in Package 'dcemriS4' |
| orthographic-method | Methods for Function 'orthographic' in Package 'dcemriS4' |
| orthographic-methods | Methods for Function 'orthographic' in Package 'dcemriS4' |
| orthographic.nifti | Methods for Function 'orthographic' in Package 'dcemriS4' |
| overlay | Methods for Function overlay |
| overlay-method | Methods for Function overlay |
| overlay-methods | Methods for Function overlay |
| overlay.nifti | Methods for Function overlay |
-- P --
| patient.id | Extract Image Attribute 'patient_id' |
| patient.id-method | Extract Image Attribute 'patient_id' |
| patient.id<- | Extract Image Attribute 'patient_id' |
| patient.id<--method | Extract Image Attribute 'patient_id' |
| patient_id | Extract Image Attribute 'patient_id' |
| patient_id-method | Extract Image Attribute 'patient_id' |
| patient_id-methods | Extract Image Attribute 'patient_id' |
| patient_id-methods, | Extract Image Attribute 'patient_id' |
| patient_id<- | Extract Image Attribute 'patient_id' |
| patient_id<--method | Extract Image Attribute 'patient_id' |
| performPermutation | Transform array with orthogonal permutation matrix |
| pixdim | Extract Image Attribute 'pixdim' |
| pixdim-method | Extract Image Attribute 'pixdim' |
| pixdim-methods | Extract Image Attribute 'pixdim' |
| pixdim-methods, | Extract Image Attribute 'pixdim' |
| pixdim<- | Extract Image Attribute 'pixdim' |
| pixdim<--method | Extract Image Attribute 'pixdim' |
-- Q --
| qform | Extract NIfTI 3D Image Orientation |
| qform-method | Extract NIfTI 3D Image Orientation |
| qform-methods | Extract NIfTI 3D Image Orientation |
| qform.code | Extract Image Attribute 'qform_code' |
| qform.code-method | Extract Image Attribute 'qform_code' |
| qform.code<- | Extract Image Attribute 'qform_code' |
| qform.code<--method | Extract Image Attribute 'qform_code' |
| qform_code | Extract Image Attribute 'qform_code' |
| qform_code-method | Extract Image Attribute 'qform_code' |
| qform_code-methods | Extract Image Attribute 'qform_code' |
| qform_code-methods, | Extract Image Attribute 'qform_code' |
| qform_code<- | Extract Image Attribute 'qform_code' |
| qform_code<--method | Extract Image Attribute 'qform_code' |
| qoffset.x | Extract Image Attribute 'qoffset_x' |
| qoffset.x-method | Extract Image Attribute 'qoffset_x' |
| qoffset.x<- | Extract Image Attribute 'qoffset_x' |
| qoffset.x<--method | Extract Image Attribute 'qoffset_x' |
| qoffset.y | Extract Image Attribute 'qoffset_y' |
| qoffset.y-method | Extract Image Attribute 'qoffset_y' |
| qoffset.y<- | Extract Image Attribute 'qoffset_y' |
| qoffset.y<--method | Extract Image Attribute 'qoffset_y' |
| qoffset.z | Extract Image Attribute 'qoffset_z' |
| qoffset.z-method | Extract Image Attribute 'qoffset_z' |
| qoffset.z<- | Extract Image Attribute 'qoffset_z' |
| qoffset.z<--method | Extract Image Attribute 'qoffset_z' |
| qoffset_x | Extract Image Attribute 'qoffset_x' |
| qoffset_x-method | Extract Image Attribute 'qoffset_x' |
| qoffset_x-methods | Extract Image Attribute 'qoffset_x' |
| qoffset_x-methods, | Extract Image Attribute 'qoffset_x' |
| qoffset_x<- | Extract Image Attribute 'qoffset_x' |
| qoffset_x<--method | Extract Image Attribute 'qoffset_x' |
| qoffset_y | Extract Image Attribute 'qoffset_y' |
| qoffset_y-method | Extract Image Attribute 'qoffset_y' |
| qoffset_y-methods | Extract Image Attribute 'qoffset_y' |
| qoffset_y-methods, | Extract Image Attribute 'qoffset_y' |
| qoffset_y<- | Extract Image Attribute 'qoffset_y' |
| qoffset_y<--method | Extract Image Attribute 'qoffset_y' |
| qoffset_z | Extract Image Attribute 'qoffset_z' |
| qoffset_z-method | Extract Image Attribute 'qoffset_z' |
| qoffset_z-methods | Extract Image Attribute 'qoffset_z' |
| qoffset_z-methods, | Extract Image Attribute 'qoffset_z' |
| qoffset_z<- | Extract Image Attribute 'qoffset_z' |
| qoffset_z<--method | Extract Image Attribute 'qoffset_z' |
| quatern.b | Extract Image Attribute 'quatern_b' |
| quatern.b-method | Extract Image Attribute 'quatern_b' |
| quatern.b<- | Extract Image Attribute 'quatern_b' |
| quatern.b<--method | Extract Image Attribute 'quatern_b' |
| quatern.c | Extract Image Attribute 'quatern_c' |
| quatern.c-method | Extract Image Attribute 'quatern_c' |
| quatern.c<- | Extract Image Attribute 'quatern_c' |
| quatern.c<--method | Extract Image Attribute 'quatern_c' |
| quatern.d | Extract Image Attribute 'quatern_d' |
| quatern.d-method | Extract Image Attribute 'quatern_d' |
| quatern.d<- | Extract Image Attribute 'quatern_d' |
| quatern.d<--method | Extract Image Attribute 'quatern_d' |
| quaternion2mat44 | Convert Quaternion into a Rotation Matrix |
| quaternion2rotation | Convert Quaternion into a Rotation Matrix |
| quatern_b | Extract Image Attribute 'quatern_b' |
| quatern_b-method | Extract Image Attribute 'quatern_b' |
| quatern_b-methods | Extract Image Attribute 'quatern_b' |
| quatern_b-methods, | Extract Image Attribute 'quatern_b' |
| quatern_b<- | Extract Image Attribute 'quatern_b' |
| quatern_b<--method | Extract Image Attribute 'quatern_b' |
| quatern_c | Extract Image Attribute 'quatern_c' |
| quatern_c-method | Extract Image Attribute 'quatern_c' |
| quatern_c-methods | Extract Image Attribute 'quatern_c' |
| quatern_c-methods, | Extract Image Attribute 'quatern_c' |
| quatern_c<- | Extract Image Attribute 'quatern_c' |
| quatern_c<--method | Extract Image Attribute 'quatern_c' |
| quatern_d | Extract Image Attribute 'quatern_d' |
| quatern_d-method | Extract Image Attribute 'quatern_d' |
| quatern_d-methods | Extract Image Attribute 'quatern_d' |
| quatern_d-methods, | Extract Image Attribute 'quatern_d' |
| quatern_d<- | Extract Image Attribute 'quatern_d' |
| quatern_d<--method | Extract Image Attribute 'quatern_d' |
-- R --
| readAFNI | readAFNI |
| readANALYZE | readANALYZE |
| readNIfTI | readNIfTI |
| regular | Extract Image Attribute 'regular' |
| regular-method | Extract Image Attribute 'regular' |
| regular-methods | Extract Image Attribute 'regular' |
| regular-methods, | Extract Image Attribute 'regular' |
| regular<- | Extract Image Attribute 'regular' |
| regular<--method | Extract Image Attribute 'regular' |
| reorient | Reorient Image using NIfTI header |
| resetSlopeIntercept | Change Intercept to 0 and Slope to 1 in NIfTI Object |
| rmgz | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmhdr | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmhdrgz | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmimg | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmimggz | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmnii | Remove File Extensions Around the NIfTI/ANALYZE Formats |
| rmniigz | Remove File Extensions Around the NIfTI/ANALYZE Formats |
-- S --
| scannum | Extract Image Attribute 'scannum' |
| scannum-method | Extract Image Attribute 'scannum' |
| scannum-methods | Extract Image Attribute 'scannum' |
| scannum-methods, | Extract Image Attribute 'scannum' |
| scannum<- | Extract Image Attribute 'scannum' |
| scannum<--method | Extract Image Attribute 'scannum' |
| scl.inter | Extract Image Attribute 'scl_inter' |
| scl.inter-method | Extract Image Attribute 'scl_inter' |
| scl.inter<- | Extract Image Attribute 'scl_inter' |
| scl.inter<--method | Extract Image Attribute 'scl_inter' |
| scl.slope | Extract Image Attribute 'scl_slope' |
| scl.slope-method | Extract Image Attribute 'scl_slope' |
| scl.slope<- | Extract Image Attribute 'scl_slope' |
| scl.slope<--method | Extract Image Attribute 'scl_slope' |
| scl_inter | Extract Image Attribute 'scl_inter' |
| scl_inter-method | Extract Image Attribute 'scl_inter' |
| scl_inter-methods | Extract Image Attribute 'scl_inter' |
| scl_inter-methods, | Extract Image Attribute 'scl_inter' |
| scl_inter<- | Extract Image Attribute 'scl_inter' |
| scl_inter<--method | Extract Image Attribute 'scl_inter' |
| scl_slope | Extract Image Attribute 'scl_slope' |
| scl_slope-method | Extract Image Attribute 'scl_slope' |
| scl_slope-methods | Extract Image Attribute 'scl_slope' |
| scl_slope-methods, | Extract Image Attribute 'scl_slope' |
| scl_slope<- | Extract Image Attribute 'scl_slope' |
| scl_slope<--method | Extract Image Attribute 'scl_slope' |
| session.error | Extract Image Attribute 'session_error' |
| session.error-method | Extract Image Attribute 'session_error' |
| session.error<- | Extract Image Attribute 'session_error' |
| session.error<--method | Extract Image Attribute 'session_error' |
| session_error | Extract Image Attribute 'session_error' |
| session_error-method | Extract Image Attribute 'session_error' |
| session_error-methods | Extract Image Attribute 'session_error' |
| session_error-methods, | Extract Image Attribute 'session_error' |
| session_error<- | Extract Image Attribute 'session_error' |
| session_error<--method | Extract Image Attribute 'session_error' |
| sform | Extract NIfTI 3D Image Orientation |
| sform-method | Extract NIfTI 3D Image Orientation |
| sform-methods | Extract NIfTI 3D Image Orientation |
| sform.code | Extract Image Attribute 'sform_code' |
| sform.code-method | Extract Image Attribute 'sform_code' |
| sform.code<- | Extract Image Attribute 'sform_code' |
| sform.code<--method | Extract Image Attribute 'sform_code' |
| sform_code | Extract Image Attribute 'sform_code' |
| sform_code-method | Extract Image Attribute 'sform_code' |
| sform_code-methods | Extract Image Attribute 'sform_code' |
| sform_code-methods, | Extract Image Attribute 'sform_code' |
| sform_code<- | Extract Image Attribute 'sform_code' |
| sform_code<--method | Extract Image Attribute 'sform_code' |
| show-method | Class "afni" |
| show-method | Class "anlz" |
| show-method | Class "nifti" |
| sizeof.hdr | Extract Image Attribute 'sizeof_hdr' |
| sizeof.hdr-method | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr-method | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr-methods | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr-methods, | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr<- | Extract Image Attribute 'sizeof_hdr' |
| sizeof_hdr<--method | Extract Image Attribute 'sizeof_hdr' |
| slice | Methods for Function 'slice' |
| slice-method | Methods for Function 'slice' |
| slice-methods | Methods for Function 'slice' |
| slice.code | Extract Image Attribute 'slice_code' |
| slice.code-method | Extract Image Attribute 'slice_code' |
| slice.code<- | Extract Image Attribute 'slice_code' |
| slice.code<--method | Extract Image Attribute 'slice_code' |
| slice.duration | Extract Image Attribute 'slice_duration' |
| slice.duration-method | Extract Image Attribute 'slice_duration' |
| slice.duration<- | Extract Image Attribute 'slice_duration' |
| slice.duration<--method | Extract Image Attribute 'slice_duration' |
| slice.end | Extract Image Attribute 'slice_end' |
| slice.end-method | Extract Image Attribute 'slice_end' |
| slice.end<- | Extract Image Attribute 'slice_end' |
| slice.end<--method | Extract Image Attribute 'slice_end' |
| slice.nifti | Methods for Function 'slice' |
| slice.start | Extract Image Attribute 'slice_start' |
| slice.start-method | Extract Image Attribute 'slice_start' |
| slice.start<- | Extract Image Attribute 'slice_start' |
| slice.start<--method | Extract Image Attribute 'slice_start' |
| slice_code | Extract Image Attribute 'slice_code' |
| slice_code-method | Extract Image Attribute 'slice_code' |
| slice_code-methods | Extract Image Attribute 'slice_code' |
| slice_code-methods, | Extract Image Attribute 'slice_code' |
| slice_code<- | Extract Image Attribute 'slice_code' |
| slice_code<--method | Extract Image Attribute 'slice_code' |
| slice_duration | Extract Image Attribute 'slice_duration' |
| slice_duration-method | Extract Image Attribute 'slice_duration' |
| slice_duration-methods | Extract Image Attribute 'slice_duration' |
| slice_duration-methods, | Extract Image Attribute 'slice_duration' |
| slice_duration<- | Extract Image Attribute 'slice_duration' |
| slice_duration<--method | Extract Image Attribute 'slice_duration' |
| slice_end | Extract Image Attribute 'slice_end' |
| slice_end-method | Extract Image Attribute 'slice_end' |
| slice_end-methods | Extract Image Attribute 'slice_end' |
| slice_end-methods, | Extract Image Attribute 'slice_end' |
| slice_end<- | Extract Image Attribute 'slice_end' |
| slice_end<--method | Extract Image Attribute 'slice_end' |
| slice_overlay | Methods for Function slice_overlay |
| slice_overlay-method | Methods for Function slice_overlay |
| slice_overlay-methods | Methods for Function slice_overlay |
| slice_overlay.nifti | Methods for Function slice_overlay |
| slice_start | Extract Image Attribute 'slice_start' |
| slice_start-method | Extract Image Attribute 'slice_start' |
| slice_start-methods | Extract Image Attribute 'slice_start' |
| slice_start-methods, | Extract Image Attribute 'slice_start' |
| slice_start<- | Extract Image Attribute 'slice_start' |
| slice_start<--method | Extract Image Attribute 'slice_start' |
| smax | Extract Image Attribute 'smax' |
| smax-method | Extract Image Attribute 'smax' |
| smax-methods | Extract Image Attribute 'smax' |
| smax-methods, | Extract Image Attribute 'smax' |
| smax<- | Extract Image Attribute 'smax' |
| smax<--method | Extract Image Attribute 'smax' |
| smin | Extract Image Attribute 'smin' |
| smin-method | Extract Image Attribute 'smin' |
| smin-methods | Extract Image Attribute 'smin' |
| smin-methods, | Extract Image Attribute 'smin' |
| smin<- | Extract Image Attribute 'smin' |
| smin<--method | Extract Image Attribute 'smin' |
| space.time2xyzt | Bitwise Conversion Subroutines |
| srow.x | Extract Image Attribute 'srow_x' |
| srow.x-method | Extract Image Attribute 'srow_x' |
| srow.x<- | Extract Image Attribute 'srow_x' |
| srow.x<--method | Extract Image Attribute 'srow_x' |
| srow.y | Extract Image Attribute 'srow_y' |
| srow.y-method | Extract Image Attribute 'srow_y' |
| srow.y<- | Extract Image Attribute 'srow_y' |
| srow.y<--method | Extract Image Attribute 'srow_y' |
| srow.z | Extract Image Attribute 'srow_z' |
| srow.z-method | Extract Image Attribute 'srow_z' |
| srow.z<- | Extract Image Attribute 'srow_z' |
| srow.z<--method | Extract Image Attribute 'srow_z' |
| srow_x | Extract Image Attribute 'srow_x' |
| srow_x-method | Extract Image Attribute 'srow_x' |
| srow_x-methods | Extract Image Attribute 'srow_x' |
| srow_x-methods, | Extract Image Attribute 'srow_x' |
| srow_x<- | Extract Image Attribute 'srow_x' |
| srow_x<--method | Extract Image Attribute 'srow_x' |
| srow_y | Extract Image Attribute 'srow_y' |
| srow_y-method | Extract Image Attribute 'srow_y' |
| srow_y-methods | Extract Image Attribute 'srow_y' |
| srow_y-methods, | Extract Image Attribute 'srow_y' |
| srow_y<- | Extract Image Attribute 'srow_y' |
| srow_y<--method | Extract Image Attribute 'srow_y' |
| srow_z | Extract Image Attribute 'srow_z' |
| srow_z-method | Extract Image Attribute 'srow_z' |
| srow_z-methods | Extract Image Attribute 'srow_z' |
| srow_z-methods, | Extract Image Attribute 'srow_z' |
| srow_z<- | Extract Image Attribute 'srow_z' |
| srow_z<--method | Extract Image Attribute 'srow_z' |
| start_field | Extract Image Attribute 'start_field' |
| start_field-method | Extract Image Attribute 'start_field' |
| start_field-methods | Extract Image Attribute 'start_field' |
| start_field-methods, | Extract Image Attribute 'start_field' |
| start_field<- | Extract Image Attribute 'start_field' |
| start_field<--method | Extract Image Attribute 'start_field' |
-- T --
| tim.colors | Tim's Useful Color Table |
| toffset | Extract Image Attribute 'toffset' |
| toffset-method | Extract Image Attribute 'toffset' |
| toffset-methods | Extract Image Attribute 'toffset' |
| toffset-methods, | Extract Image Attribute 'toffset' |
| toffset<- | Extract Image Attribute 'toffset' |
| toffset<--method | Extract Image Attribute 'toffset' |
| translateCoordinate | Translate Voxel Coordinates |
-- U --
| unused1 | Extract Image Attribute 'unused1' |
| unused1-method | Extract Image Attribute 'unused1' |
| unused1-methods | Extract Image Attribute 'unused1' |
| unused1-methods, | Extract Image Attribute 'unused1' |
| unused1<- | Extract Image Attribute 'unused1' |
| unused1<--method | Extract Image Attribute 'unused1' |
-- V --
| verified | Extract Image Attribute 'verified' |
| verified-method | Extract Image Attribute 'verified' |
| verified-methods | Extract Image Attribute 'verified' |
| verified-methods, | Extract Image Attribute 'verified' |
| verified<- | Extract Image Attribute 'verified' |
| verified<--method | Extract Image Attribute 'verified' |
| views | Extract Image Attribute 'views' |
| views-method | Extract Image Attribute 'views' |
| views-methods | Extract Image Attribute 'views' |
| views-methods, | Extract Image Attribute 'views' |
| views<- | Extract Image Attribute 'views' |
| views<--method | Extract Image Attribute 'views' |
| vols.added | Extract Image Attribute 'vols_added' |
| vols.added-method | Extract Image Attribute 'vols_added' |
| vols.added<- | Extract Image Attribute 'vols_added' |
| vols.added<--method | Extract Image Attribute 'vols_added' |
| vols_added | Extract Image Attribute 'vols_added' |
| vols_added-method | Extract Image Attribute 'vols_added' |
| vols_added-methods | Extract Image Attribute 'vols_added' |
| vols_added-methods, | Extract Image Attribute 'vols_added' |
| vols_added<- | Extract Image Attribute 'vols_added' |
| vols_added<--method | Extract Image Attribute 'vols_added' |
| vox.offset | Extract Image Attribute 'vox_offset' |
| vox.offset-method | Extract Image Attribute 'vox_offset' |
| vox.offset<- | Extract Image Attribute 'vox_offset' |
| vox.offset<--method | Extract Image Attribute 'vox_offset' |
| vox.units | Extract Image Attribute 'vox_units' |
| vox.units-method | Extract Image Attribute 'vox_units' |
| vox.units<- | Extract Image Attribute 'vox_units' |
| vox.units<--method | Extract Image Attribute 'vox_units' |
| voxdim | Gets Voxel Dimensions |
| voxres | Gets Voxel Resolution |
| vox_offset | Extract Image Attribute 'vox_offset' |
| vox_offset-method | Extract Image Attribute 'vox_offset' |
| vox_offset-methods | Extract Image Attribute 'vox_offset' |
| vox_offset-methods, | Extract Image Attribute 'vox_offset' |
| vox_offset<- | Extract Image Attribute 'vox_offset' |
| vox_offset<--method | Extract Image Attribute 'vox_offset' |
| vox_units | Extract Image Attribute 'vox_units' |
| vox_units-method | Extract Image Attribute 'vox_units' |
| vox_units-methods | Extract Image Attribute 'vox_units' |
| vox_units-methods, | Extract Image Attribute 'vox_units' |
| vox_units<- | Extract Image Attribute 'vox_units' |
| vox_units<--method | Extract Image Attribute 'vox_units' |
-- W --
| writeAFNI | writeAFNI |
| writeAFNI-method | writeAFNI |
| writeAFNI-methods | writeAFNI |
| writeANALYZE | writeANALYZE |
| writeANALYZE-method | writeANALYZE |
| writeANALYZE-methods | writeANALYZE |
| writeNIfTI | writeNIfTI |
| writeNIfTI-method | writeNIfTI |
| writeNIfTI-methods | writeNIfTI |
-- X --
| xyzt.units | Extract Image Attribute 'xyzt_units' |
| xyzt.units-method | Extract Image Attribute 'xyzt_units' |
| xyzt.units<- | Extract Image Attribute 'xyzt_units' |
| xyzt.units<--method | Extract Image Attribute 'xyzt_units' |
| xyzt2space | Bitwise Conversion Subroutines |
| xyzt2time | Bitwise Conversion Subroutines |
| xyzt_units | Extract Image Attribute 'xyzt_units' |
| xyzt_units-method | Extract Image Attribute 'xyzt_units' |
| xyzt_units-methods | Extract Image Attribute 'xyzt_units' |
| xyzt_units-methods, | Extract Image Attribute 'xyzt_units' |
| xyzt_units<- | Extract Image Attribute 'xyzt_units' |
| xyzt_units<--method | Extract Image Attribute 'xyzt_units' |
-- Z --
| zero_trans | Change Intercept to 0 and Slope to 1 in NIfTI Object |
-- misc --
| [<--method | Methods for Function [<- in Package 'base' |
| [<--methods | Methods for Function [<- in Package 'base' |