as.list.sdreport |
Convert estimates to original list format. |
benchmark |
Benchmark parallel templates |
checkConsistency |
Check consistency and Laplace accuracy |
compile |
Compile a C++ template to DLL suitable for MakeADFun. |
config |
Get or set internal configuration variables |
confint.tmbprofile |
Profile based confidence intervals. |
dynlib |
Add dynlib extension |
FreeADFun |
Free memory allocated on the C++ side by 'MakeADFun'. |
gdbsource |
Source R-script through gdb to get backtrace. |
GK |
Gauss Kronrod configuration |
MakeADFun |
Construct objective functions with derivatives based on a compiled C++ template. |
newton |
Generalized newton optimizer. |
newtonOption |
Set newton options for a model object. |
normalize |
Normalize process likelihood using the Laplace approximation. |
oneStepPredict |
Calculate one-step-ahead (OSA) residuals for a latent variable model. |
openmp |
Control number of OpenMP threads used by a TMB model. |
plot.parallelBenchmark |
Benchmark parallel templates |
plot.tmbprofile |
Plot likelihood profile. |
precompile |
Precompile the TMB library in order to speed up compilation of templates. |
print.backtrace |
Source R-script through gdb to get backtrace. |
print.checkConsistency |
Print output from 'checkConsistency' |
print.sdreport |
Print brief model summary |
Rinterface |
Create minimal R-code corresponding to a cpp template. |
runExample |
Run one of the test examples. |
runSymbolicAnalysis |
Run symbolic analysis on sparse Hessian |
sdreport |
General sdreport function. |
SR |
Sequential reduction configuration |
summary.checkConsistency |
Summarize output from 'checkConsistency' |
summary.sdreport |
summary tables of model parameters |
template |
Create cpp template to get started. |
TMB.Version |
Version information on API and ABI. |
tmbprofile |
Adaptive likelihood profiling. |
tmbroot |
Compute likelihood profile confidence intervals of a TMB object by root-finding |