aa |
Build an amino acid (AA) vector |
aliview |
AliView: DNA sequences viewer |
alphabets |
Biological alphabets |
as-tibble-ape |
Convert DNAbin/AAbin to tibble |
as-tibble-bioseq |
Convert bioseq DNA, RNA and AA to tibble |
as_aa |
Coercion to an amino acid (AA) vector |
as_AAbin |
Coerce to AAbin |
as_AAbin.tbl_df |
Coerce tibble to AAbin |
as_dna |
Coercion to DNA vector |
as_DNAbin |
Coerce to DNAbin |
as_DNAbin.tbl_df |
Coerce tibble to DNAbin |
as_rna |
Coercion to RNA vector |
as_seqinr_alignment |
Coerce to seqinr alignment |
as_tibble.AAbin |
Convert DNAbin/AAbin to tibble |
as_tibble.bioseq_aa |
Convert bioseq DNA, RNA and AA to tibble |
as_tibble.bioseq_dna |
Convert bioseq DNA, RNA and AA to tibble |
as_tibble.bioseq_rna |
Convert bioseq DNA, RNA and AA to tibble |
as_tibble.DNAbin |
Convert DNAbin/AAbin to tibble |
dic_genetic_codes |
Genetic code tables |
dna |
Build a DNA vector |
fragilaria |
DNA sequences (rbcL) for various Fragilaria |
genetic-codes |
Genetic code tables |
is_aa |
Test if the object is an amino acid vector |
is_dna |
Test if the object is a DNA vector |
is_rna |
Test if the object is a RNA vector |
new_aa |
Amino acid (AA) vector constructor |
new_dna |
DNA vector constructor |
new_rna |
RNA vector constructor |
read_fasta |
Read sequences in FASTA format |
rev_complement |
Reverse and complement sequences |
rna |
Build a RNA vector |
seaview |
SeaView: DNA sequences and phylogenetic tree viewer |
seq-replace |
Replace matched patterns in sequences |
seq_cluster |
Cluster sequences by similarity |
seq_combine |
Combine multiple sequences |
seq_complement |
Reverse and complement sequences |
seq_consensus |
Find a consensus sequence for a set of sequences. |
seq_count_pattern |
Count the number of matches in sequences |
seq_crop_pattern |
Crop sequences using delimiting patterns |
seq_crop_position |
Crop sequences between two positions |
seq_detect_pattern |
Detect the presence of patterns in sequences |
seq_disambiguate_IUPAC |
Disambiguate biological sequences |
seq_extract_pattern |
Extract matching patterns from sequences |
seq_extract_position |
Extract a region between two positions in sequences |
seq_nchar |
Count the number of character in sequences |
seq_nseq |
Number of sequences in a vector |
seq_remove_pattern |
Remove matched patterns in sequences |
seq_remove_position |
Remove a region between two positions in sequences. |
seq_replace_pattern |
Replace matched patterns in sequences |
seq_replace_position |
Replace a region between two positions in sequences |
seq_reverse |
Reverse and complement sequences |
seq_rev_transcribe |
Transcribe DNA, reverse-transcribe RNA |
seq_rev_translate |
Reverse translate amino acid sequences |
seq_spellout |
Spell out sequences |
seq_split_kmer |
Split sequences into k-mers |
seq_split_pattern |
Split sequences |
seq_stat_gc |
Compute G+C content |
seq_stat_prop |
Compute proportions for characters |
seq_transcribe |
Transcribe DNA, reverse-transcribe RNA |
seq_translate |
Translate DNA/RNA sequences into amino acids |
transcription |
Transcribe DNA, reverse-transcribe RNA |
write_fasta |
Write sequences in FASTA format |