anovir-package |
anovir: Analysis of Virulence |

anovir |
anovir: Analysis of Virulence |

av_long_infected |
Average longevity: estimate for infected hosts |

av_long_uninfected |
Average longevity: estimate for uninfected hosts |

check_data |
Checks data are correctly described for models |

conf_ints_virulence |
Approximate 95% confidence intervals for virulence |

data_blanford |
Full data from Blanford et al (2012) |

data_lorenz |
A subset of data from Lorenz & Koella (2011) |

data_parker |
Full data from Parker et al (2014) |

etd_infected |
Expected time of death: infected hosts |

etd_uninfected |
Expected time of death: uninfected hosts |

nll_basic |
Negative log-likelihood function: basic model |

nll_basic_logscale |
Negative log-likelihood function: basic model on logscale |

nll_controls |
Negative log-likelihood function: control data only |

nll_exposed_infected |
Negative log-likelihood function: exposed-infected |

nll_frailty |
Negative log-likelihood function: frailty |

nll_frailty_correlated |
Negative log-likelihood function: correlated frailty model |

nll_frailty_logscale |
Negative log-likelihood function: frailty variables on logscale |

nll_frailty_shared |
Negative log-likelihood function: frailty shared |

nll_proportional_virulence |
Negative log-likelihood function: nll proportional virulence |

nll_recovery |
Negative log-likelihood function: recovery model |

nll_recovery_II |
Negative log-likelihood function: recovery model, no background mortality |

nll_two_inf_subpops_obs |
Negative log-likelihood function: two observed subpopulations of infected hosts |

nll_two_inf_subpops_unobs |
Negative log-likelihood function: two unobserved subpopulations of infected hosts |

recovery_data |
Simulated recovery data |

recovery_data_II |
Simulated recovery data, with no background mortality |

sim_data_nll_basic |
Function simulating survival data for nll_basic |