Process Control and Validation of Forensic STR Kits

Documentation for package ‘strvalidator’ version 2.4.1

Help Pages

Process Control and Internal Validation of Forensic STR Kits

-- A --

addColor	Add Color Information.
addData	Adds New Data Columns to a Data Frame
addData_gui	Add Data
addDye_gui	Add Dye Information
addMarker	Add Missing Markers.
addMarker_gui	Add Missing Markers
addOrder	Add Marker Order.
addSize	Add Size Information.
addSize_gui	Add Size Information
auditTrail	Log Audit Trail.

-- C --

calculateAllele	Calculate Allele
calculateAllele_gui	Calculate Allele
calculateAllT	Calculate Stochastic Thresholds
calculateAllT_gui	Calculate Stochastic Thresholds
calculateAT	Calculate Analytical Threshold
calculateAT6	Calculate Analytical Threshold
calculateAT6_gui	Calculate Analytical Threshold
calculateAT_gui	Calculate Analytical Threshold
calculateCapillary	Calculate Capillary Balance
calculateCapillary_gui	Calculate Capillary Balance
calculateConcordance	Calculate Concordance.
calculateConcordance_gui	Calculate Concordance
calculateCopies	Calculate Allele Copies
calculateCopies_gui	Calculate Allele Copies
calculateDropout	Calculate Drop-out Events
calculateDropout_gui	Calculate Dropout Events
calculateHb	Calculate Heterozygote Balance
calculateHb_gui	Calculate Heterozygote Balance
calculateHeight	Calculate Peak Height.
calculateHeight_gui	Calculate Peak Height
calculateLb	Calculate Inter-locus Balance
calculateLb_gui	Calculate Locus Balance
calculateMixture	Calculate Mixture.
calculateMixture_gui	Calculate Mixture
calculateOL	Analyze Off-ladder Alleles
calculateOL_gui	Analyze Off-ladder Alleles
calculateOverlap	Calculate Bins Overlap
calculateOverlap_gui	Calculate Bins Overlap
calculatePeaks	Calculate Peaks
calculatePeaks_gui	Calculate Peaks
calculatePullup	Calculate Spectral Pull-up
calculatePullup_gui	Calculate Spectral Pull-up
calculateRatio	Calculate Ratio
calculateRatio_gui	Calculate Ratio
calculateResultType	Calculate Result Type
calculateResultType_gui	Calculate Result Type
calculateSlope	Calculate Profile Slope.
calculateSlope_gui	Calculate Profile Slope
calculateSpike	Detect Spike
calculateSpike_gui	Detect Spike
calculateStatistics	Summary Statistics
calculateStatistics_gui	Calculate Statistics
calculateStutter	Calculate Stutter
calculateStutter_gui	Calculate Stutter
calculateT	Calculate Stochastic Threshold
checkDataset	Check Dataset
checkSubset	Check Subset
checkSubset_gui	Check Subset
colConvert	Convert Columns
colNames	Column Names
columns	Column Actions
columns_gui	Column Actions
combineBinsAndPanels	Combine Bins And Panels Files.
combine_gui	Combine Datasets
cropData_gui	Crop Or Replace

-- D --

detectKit

Detect Kit

-- E --

editData_gui	Edit or View Data Frames
export	Export
export_gui	Export

-- F --

filterProfile	Filter Profile
filterProfile_gui	Filter Profile

-- G --

generateEPG	Generate EPG
generateEPG_gui	Generate EPG
getKit	Get Kit
getSetting	Get Settings.
getStrings	Get Language Strings
ggsave_gui	Save Image
guessProfile	Guess Profile
guessProfile_gui	Guess Profile

-- H --

heightToPeak

Height To Peak.

-- I --

import	Import Data
import_gui	Import Data

-- L --

listObjects

List Objects

-- M --

makeKit_gui	Make Kit
maskAT	Mask And Prepare Data To Analyze Analytical Threshold
modelDropout_gui	Model And Plot Drop-out Events

-- P --

plotAT_gui	Plot Analytical Threshold
plotBalance_gui	Plot Balance
plotCapillary_gui	Plot Capillary Balance
plotContamination_gui	Plot Contamination
plotDistribution_gui	Plot Distribution
plotDropout_gui	Plot Drop-out Events
plotEPG2	plotEPG2
plotEPG2_gui	Plot EPG
plotGroups_gui	Plot Empirical Cumulative Distributions
plotKit_gui	Plot Kit Marker Ranges
plotPeaks_gui	Plot Peaks
plotPrecision_gui	Plot Precision
plotPullup_gui	Plot Pull-up
plotRatio_gui	Plot Ratio
plotResultType_gui	Plot Result Type
plotSlope_gui	Plot Profile Slope
plotStutter_gui	Plot Stutter

-- R --

ref1	ESX17 Positive Control Profile
ref11	ESX17 Positive Control Profile
ref2	SGMPlus example data
ref3	ESX17 example data for dropout analysis.
ref4	ESX17 example data for dropout analysis.
ref51	ESX17 example data for mixture analysis.
ref52	ESX17 example data for mixture analysis.
ref61	Fusion example data for dropout analysis.
ref62	Fusion example data for dropout analysis.
ref7	ESSplex SE QS example data for inhibition analysis.
removeArtefact	Remove Artefacts
removeArtefact_gui	Remove Artefact
removeSpike	Remove Spikes
removeSpike_gui	Remove Spike

-- S --

sample_tableToList	sample_tableToList
scrambleAlleles	Scramble Alleles
set1	Typing data in 'GeneMapper' format
set2	SGMPlus example data
set3	ESX17 example data for dropout analysis.
set4	ESX17 example data for dropout analysis.
set5	ESX17 example data for mixture analysis.
set6	Fusion example data for dropout analysis.
set7	ESSplex SE QS example data for inhibition analysis.
slim	Slim Data Frames
slim_gui	Slim Data Frames
sortMarker	Sort Markers
strvalidator	Graphical User Interface For The STR-validator Package

-- T --

trim	Trim Data
trim_gui	Trim Data