Parallelized Minimum Redundancy, Maximum Relevance (mRMR)

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Documentation for package ‘mRMRe’ version 2.1.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

adjacencyMatrix	Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrix-method	Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrixSum	Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
adjacencyMatrixSum-method	Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
causality	Accessor function for the 'causality' information in a mRMRe.Filter and mRMRe.Network object.
causality-method	Accessor function for the 'causality' information in a mRMRe.Filter and mRMRe.Network object.
cgps.annot	Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
cgps.ge	Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
cgps.ic50	Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
correlate	Function to compute various correlation measures between two variables
export_concordance_index	Export concordance index
export_filters	Export filters
export_filters_bootstrap	Export filters bootstrap
export_mim	Export mim
featureCount	Accessor function for the 'featureCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
featureCount-method	Accessor function for the 'featureCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
featureData	Accessor function for the 'featureData' information in a mRMRe.Data object
featureData-method	Accessor function for the 'featureData' information in a mRMRe.Data object
featureNames	Accessor function for the 'featureNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
featureNames-method	Accessor function for the 'featureNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
get.thread.count	openMP Thread Count
get_thread_count	openMP Thread Count
mim	Accessor function for the 'mim' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
mim-method	Accessor function for the 'mim' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
mRMR.classic	Class '"mRMRe.Filter"'
mRMR.data	Class '"mRMRe.Data"'
mRMR.ensemble	Class '"mRMRe.Filter"'
mRMR.network	Class '"mRMRe.Network"'
mRMRe.Data-class	Class '"mRMRe.Data"'
mRMRe.Filter-class	Class '"mRMRe.Filter"'
mRMRe.Network-class	Class '"mRMRe.Network"'
priors	Accessor function for the 'priors' information in a mRMRe.Data object
priors-method	Accessor function for the 'priors' information in a mRMRe.Data object
priors<-	Accessor function for the 'priors' information in a mRMRe.Data object
priors<--method	Accessor function for the 'priors' information in a mRMRe.Data object
sampleCount	Accessor function for the 'sampleCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleCount-method	Accessor function for the 'sampleCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleNames	Accessor function for the 'sampleNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleNames-method	Accessor function for the 'sampleNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
sampleStrata	Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata-method	Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata<-	Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleStrata<--method	Accessor function for the 'sampleStrata' information in a mRMRe.Data object
sampleWeights	Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights-method	Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights<-	Accessor function for the 'sampleWeights' information in a mRMRe.Data object
sampleWeights<--method	Accessor function for the 'sampleWeights' information in a mRMRe.Data object
scores	mRMR Scores as per the MI gain for each feature
scores-method	mRMR Scores as per the MI gain for each feature
set.thread.count	openMP Thread Count
set_thread_count	openMP Thread Count
solutions	Basic result of the mRMR procedure
solutions-method	Basic result of the mRMR procedure
subsetData	Returns a mRMRe.Data object using a subset of the current mRMRe.Data object.
subsetData-method	Returns a mRMRe.Data object using a subset of the current mRMRe.Data object.
target	mRMR Target(s)
target-method	mRMR Target(s)
visualize	mRMRe Network display
visualize-method	mRMRe Network display