Extra Recipes Steps for Dealing with Omics Data

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Documentation for package ‘scimo’ version 0.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cheese_abundance	Abundance of Fungal Communities in Cheese
cheese_taxonomy	Abundance of Fungal Communities in Cheese
cv	Coefficient of variation
pedcan_expression	Gene Expression of Pediatric Cancer
step_aggregate_hclust	Feature aggregation step based on a hierarchical clustering
step_aggregate_list	Feature aggregation step based on a defined list
step_rownormalize_tss	Feature normalization step using total sum scaling
step_select_background	Feature selection step using background level
step_select_cv	Feature selection step using the coefficient of variation
step_select_kruskal	Feature selection step using Kruskal test
step_select_wilcoxon	Feature selection step using Wilcoxon test
tidy.step_aggregate_hclust	Feature aggregation step based on a hierarchical clustering
tidy.step_aggregate_list	Feature aggregation step based on a defined list
tidy.step_rownormalize_tss	Feature normalization step using total sum scaling
tidy.step_select_background	Feature selection step using background level
tidy.step_select_cv	Feature selection step using the coefficient of variation
tidy.step_select_kruskal	Feature selection step using Kruskal test
tidy.step_select_wilcoxon	Feature selection step using Wilcoxon test
var_to_keep	Decide which variable to keep