Latent Factor Mixed Models

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Documentation for package ‘lfmm’ version 1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

effect_size	Direct effect sizes estimated from latent factor models
example.data	Genetic and phenotypic data for Arabidopsis thaliana
glm_test	GLM tests with latent factor mixed models
lfmm	R package : Fast and Accurate statistical methods for adjusting confounding factors in association studies.
lfmm_lasso	LFMM least-squares estimates with lasso penalty (Sparse LFMM)
lfmm_ridge	LFMM least-squares estimates with ridge penalty
lfmm_sampler	LFMM generative data sampler
lfmm_test	Statistical tests with latent factor mixed models (linear models)
predict_lfmm	Predict polygenic scores from latent factor models
skin.exposure	Simulated (and real) methylation levels for sun exposed patient patients