Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

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Documentation for package ‘QTLRel’ version 1.14

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

aicVC	AIC Model Selection
blup	Best Linear Unbiased Prediction
cic	Calculate Jacquard condensed identity coefficients
eigen.sym	Spectral decomposition of a matrix
estVC	Estimate Variance Component Parameters
fv	A collection of other functions.
gdatF8	Genotype data, phenotype data, genetic map and pedigree.
genMatrix	Derive genetic matrices
genoImpute	Impute Genotypic Data
genoPos	A collection of other functions.
genoProb	Probability of a Genotype.
genoSim	Generate Genotypic Data
gls	Generalized Least Squares Estimates
gmapF8	Genotype data, phenotype data, genetic map and pedigree.
gmF8	Genotype data, phenotype data, genetic map and pedigree.
gvar	A collection of other functions.
hapSim	Generate Genotypic Data
ibs	Estimate Jacquard condensed identity coefficients
kinship	Calculate kinship coefficients
lodci	Estimate LOD Support Intervals
mAIC	Multiple QTL AIC
mAIC.HK	Multiple QTL AIC
miscEx	Genotype data, phenotype data, genetic map and pedigree.
nullSim	Simulate null distribution
pdatF8	Genotype data, phenotype data, genetic map and pedigree.
pedF8	Genotype data, phenotype data, genetic map and pedigree.
pedF8.1	Genotype data, phenotype data, genetic map and pedigree.
pedF8.2	Genotype data, phenotype data, genetic map and pedigree.
pedRecode	Recode a Pedigree
pkolm	A collection of other functions.
plot	Plotting
plot.scanOne	Plotting
plot.scanTwo	Plotting
plotit	Plotting
qkolm	A collection of other functions.
qqPlot	Quantile-Quantile Plots
qtl2rel	Convert data from R/qtl to QTLRel format
qtlVar	QTL Variance
rel2qtl	Convert data from QTLRel to R/qtl format
rem	Random effect matrices
scanOne	Genome Scan for QTL
scanTwo	Genome Scan for Epistasis