Regulatory DNA Element Prediction
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Documentation for package ‘REPTILE’ version 1.0
Help Pages
| REPTILE-package | Regulatory Element Prediction |
| calculate_epimark_deviation | Internal - calculating intensity deviation feature |
| get_option_parser_compute_score | Internal - parsing options for REPTILE_compute_score.R |
| get_option_parser_evaluation | Internal - parsing options for REPTILE_evaluate_prediction.R |
| get_option_parser_training | Internal - parsing options for REPTILE_train.R |
| read_epigenomic_data | Reading epigenomic data from epimark file |
| read_label | Reading labels of regions from label file |
| REPTILE | Regulatory Element Prediction |
| reptile_eval_prediction | Evaluating the prediction results |
| reptile_predict | Predicting enhancer activity of given regions |
| reptile_predict_genome_wide | Predicting enhancer activity |
| reptile_predict_one_mode | Internal - predicting enhancer activity of DMRs or query regions |
| reptile_train | Learn a REPTILE enhancer model |
| reptile_train_one_mode | Internal - Learn single random forest classifier |
| rsd | REPTILE sample data (rsd) |