REPTILE-package |
Regulatory Element Prediction |
calculate_epimark_deviation |
Internal - calculating intensity deviation feature |
get_option_parser_compute_score |
Internal - parsing options for REPTILE_compute_score.R |
get_option_parser_evaluation |
Internal - parsing options for REPTILE_evaluate_prediction.R |
get_option_parser_training |
Internal - parsing options for REPTILE_train.R |
read_epigenomic_data |
Reading epigenomic data from epimark file |
read_label |
Reading labels of regions from label file |
REPTILE |
Regulatory Element Prediction |
reptile_eval_prediction |
Evaluating the prediction results |
reptile_predict |
Predicting enhancer activity of given regions |
reptile_predict_genome_wide |
Predicting enhancer activity |
reptile_predict_one_mode |
Internal - predicting enhancer activity of DMRs or query regions |
reptile_train |
Learn a REPTILE enhancer model |
reptile_train_one_mode |
Internal - Learn single random forest classifier |
rsd |
REPTILE sample data (rsd) |