Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets

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Documentation for package ‘sendigR’ version 1.0.0

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dbCreateIndexes Create indexes in SEND database
dbCreateSchema Create a SEND schema in an open and empty database
dbDeleteStudies Delete one or more studies in SEND database
dbImportOneStudy Import SEND study data in SAS xport format into a SEND database from a single study folder
dbImportStudies Import SEND study data in SAS xport format into a SEND database from a hierarchy study folders.
disconnectDB Disconnect from the open database.
execSendDashboard Execute sendDashboard app
genericQuery Execute database query and returns fetched rows.
gen_vocab Create json file for vocabulary mappings. Keys are synonyms and values are the CDISC Controlled Terminology Submission values. Vocabularies are defined by column values from the tab-delimited files.
getControlSubj Extract a list of control animals for a list of studies
getFindingsPhase Extract a set of findings for a specified study phase - or just add phase for each animal.
getFindingsSubjAge Add the subject age at finding time - and optionally extract the set of findings within a specified range of age.
getStudiesSDESIGN Extract a list of SEND studies with a specified study design - or just add actual study design for each study.
getStudiesSTSTDTC Extract a list of SEND studies with study start date within a specified interval - or just add actual study start date for each study
getSubjData Extract data from a subject level domain.
getSubjRoute Extract the set of animals of the specified route of administration - or just add actual route of administration for each animal.
getSubjSex Extract the set of animals of the specified sex - or just add the sex of each animal.
getSubjSpeciesStrain Extract the set of animals of the specified species and strain - or just add the species and strain for each animal.
getTabColLabels Get labels for columns in a data.table
initEnvironment Initialize the environment.
standardize_file Standardizes SEND xpt files using CDISC controlled terminologies