Enrichment Analysis using Multiple Ontologies and FDR Correction
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Documentation for package ‘mulea’ version 1.0.1
Help Pages
| filter_ontology | Filter Ontology |
| gsea | Gene Set Enrichment Analysis (GSEA) |
| gsea-class | Gene Set Enrichment Analysis (GSEA) |
| list_to_gmt | Convert a list to ontology (GMT) 'data.frame'. |
| MuleaHypergeometricTest | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| MuleaHypergeometricTest-class | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| ora | An S4 class to represent a set based tests in mulea. |
| ora-class | An S4 class to represent a set based tests in mulea. |
| plot_barplot | Plot Barplot |
| plot_graph | Plot Graph (Network) |
| plot_heatmap | Plot Heatmap |
| plot_lollipop | Plot Lollipop |
| read_gmt | Read GMT File |
| reshape_results | Reshape Results |
| run_test | Run enrichment analysis procedure |
| run_test-method | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| run_test-method | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| run_test-method | PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
| run_test-method | Gene Set Enrichment Analysis (GSEA) |
| run_test-method | Run enrichment analysis procedure |
| SetBasedEnrichmentTest | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| SetBasedEnrichmentTest-class | PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
| SubramanianTest | PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
| SubramanianTest-class | PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
| write_gmt | Write GMT file |