filter_ontology |
Filter Ontology |
gsea |
Gene Set Enrichment Analysis (GSEA) |
gsea-class |
Gene Set Enrichment Analysis (GSEA) |
list_to_gmt |
Convert a list to ontology (GMT) 'data.frame'. |
MuleaHypergeometricTest |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
MuleaHypergeometricTest-class |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
ora |
An S4 class to represent a set based tests in mulea. |
ora-class |
An S4 class to represent a set based tests in mulea. |
plot_barplot |
Plot Barplot |
plot_graph |
Plot Graph (Network) |
plot_heatmap |
Plot Heatmap |
plot_lollipop |
Plot Lollipop |
read_gmt |
Read GMT File |
reshape_results |
Reshape Results |
run_test |
Run enrichment analysis procedure |
run_test-method |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
run_test-method |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
run_test-method |
PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
run_test-method |
Gene Set Enrichment Analysis (GSEA) |
run_test-method |
Run enrichment analysis procedure |
SetBasedEnrichmentTest |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
SetBasedEnrichmentTest-class |
PRIVATE class : An S4 class to represent a Hypergeometric tests in mulea. |
SubramanianTest |
PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
SubramanianTest-class |
PRIVATE class : An S4 class to represent a ranked based tests in mulea. |
write_gmt |
Write GMT file |