check_gene_list_overlap |
Check if input gene lists overlap |
deseq_fc_ecdf |
Plot the ECDF for DESeq2 log2(Fold Changes) |
download_parse_file |
Download and parse DESeq2 output from GSE184929 |
ecdf_stat_test |
Test for differences in log2(Fold Change) ECDFs between two gene lists using the 'stats' package |
filter_deseq |
Filter DESEQ2 Results for SeedMatchR |
get_example_data |
Download example DESeq2 data from GEO |
get_feature_seqs |
Get transcripts features and feature sequences |
get_seed |
Get the target seed sequence given a canonical seed name and input sequence |
load_example_data |
Load example DESeq2 data into the environment |
load_species_anno_db |
Load species specific 'AnnotationDb' |
plot_seeds |
Plot the Guide Strand with different optional seeds |
SeedMatchR |
Find seed matches in genomic features |