ancestor |
ancestor |
ancestor.tbl_tree |
ancestor |
as.treedata |
as.treedata |
as.treedata.tbl_tree |
as.treedata |
as.ultrametric |
as.ultrametric |
child |
child |
child.tbl_tree |
child |
drop.tip |
drop.tip method |
drop.tip,phylo |
drop.tip method |
drop.tip,treedata |
drop.tip method |
drop.tip-method |
drop.tip method |
get.data |
get.data method |
get.data-method |
get.data method |
get.fields |
get.fields method |
get.fields,treedata |
get.fields method |
get.fields-method |
get.fields method |
get.treetext |
get.treetext method |
get.treetext-method |
get.treetext method |
getNodeNum |
getNodeNum |
get_tree_data |
get_tree_data |
groupClade |
groupClade |
groupOTU |
groupOTU |
isTip |
isTip |
isTip.phylo |
isTip |
isTip.tbl_tree |
isTip |
isTip.treedata |
isTip |
keep.tip |
drop.tip method |
keep.tip-method |
drop.tip method |
MRCA |
MRCA |
Nnode.treedata |
Nnode |
node.label |
extract the node label of phylo, treedata or tbl_tree |
node.label<- |
the tip or internal node label assign of tbl_tree phylo and treedata |
node.label<-.phylo |
the tip or internal node label assign of tbl_tree phylo and treedata |
node.label<-.tbl_tree |
the tip or internal node label assign of tbl_tree phylo and treedata |
node.label<-.treedata |
the tip or internal node label assign of tbl_tree phylo and treedata |
nodeid |
nodeid |
nodelab |
nodelab |
offspring |
offspring |
offspring.tbl_tree |
offspring |
parent |
parent |
parent.tbl_tree |
parent |
root.treedata |
root |
rootnode |
rootnode |
show |
show method |
show-method |
Class "treedata" This class stores phylogenetic tree with associated data |
sibling |
sibling |
td-label-assign |
the tip or internal node label assign of tbl_tree phylo and treedata |
tip.label |
extract the tip label of phylo treedata or tbl_tree |
tip.label<- |
the tip or internal node label assign of tbl_tree phylo and treedata |
tip.label<-.phylo |
the tip or internal node label assign of tbl_tree phylo and treedata |
tip.label<-.tbl_tree |
the tip or internal node label assign of tbl_tree phylo and treedata |
tip.label<-.treedata |
the tip or internal node label assign of tbl_tree phylo and treedata |
treedata |
treedata |
treedata-class |
Class "treedata" This class stores phylogenetic tree with associated data |
tree_subset |
Subset tree objects by related nodes |
tree_subset.phylo |
Subset tree objects by related nodes |
tree_subset.treedata |
Subset tree objects by related nodes |