Comprehensive and Easy to Use Quality Control of GWAS Results

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Documentation for package ‘GWASinspector’ version 1.6.5

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

GWASinspector-package	Comprehensive and Easy to Use Quality Control of GWAS Results
compare_GWASs	Compare summary statistics of GWAS result files
demo_inspector	Runs an example QC
get_config	Copies the template configuration file to the local machine
get_headerTranslation	Copies the template header translation table to the local machine
GWASinspector	Comprehensive and Easy to Use Quality Control of GWAS Results
Inspector	An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.
Inspector-class	An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.
manhattan_plot	Creates the Manhattan plot
result_inspector	Displays a brief report after running the QC pipeline
run_inspector	Runs the QC pipeline on a set of GWAS result files
setup_inspector	Importing a configuration file into R for setting the pipeline parameters
Study	An S4 class to represent an inspected GWAS study result file.
Study-class	An S4 class to represent an inspected GWAS study result file.
StudyList	An S4 class to represent a list of inspected GWAS study result files.
StudyList-class	An S4 class to represent a list of inspected GWAS study result files.
system_check	Checks which required and optional packages are available