add.trajectories |
Plot Function for RRPP |
add.tree |
Plot tool to add phylogenetic trees to ordination plots |
anova.lm.rrpp |
ANOVA for lm.rrpp model fits |
anova.measurement.error |
ANOVA for lm.rrpp model fits used in measurement.error |
classify |
Deprecated functions in RRPP |
coef.lm.rrpp |
coef for lm.rrpp model fits |
convert2ggplot |
Convert RRPP plots to ggplot objects |
effect.size |
Obtain Effect-size from a vector of values |
fishy |
Simulated fish data for measurement error analysis |
fitted.lm.rrpp |
Extract fitted values |
focusMEonSubjects |
Plot Function for RRPP |
getANOVAStats |
Utility Function for RRPP |
getModelCov |
Utility Function for RRPP |
getModels |
Utility Function for RRPP |
getPermInfo |
Utility Function for RRPP |
getResCov |
Utility Function for RRPP |
getTerms |
Utility Function for RRPP |
ICCstats |
Intraclass correlation statistics from an lm.rrpp model fits |
interSubVar |
Reveal the inter-subject variability from a measurement error analysis |
lm.rrpp |
Linear Model Evaluation with a Randomized Residual Permutation Procedure |
lm.rrpp.ws |
Linear Model Evaluation with RRPP performed within subjects |
logLik.lm.rrpp |
Calculate the log-likelihood of a lm.rrpp fit |
looCV |
Diagnostic cross-validation tool for ordination based on fitted values |
lr_test |
Likelihood ratio test for a linear model, based on RRPP |
manova.update |
MANOVA update for lm.rrpp model fits |
measurement.error |
Evaluation of measurement error for two or more multivariate measurements, for common research subjects |
model.comparison |
Model Comparisons, in terms of the log-likelihood, covariance trace, or Z-score. |
model.frame.lm.rrpp |
Extract model frame from a lm.rrpp object |
model.matrix.lm.rrpp |
Extract the model design matrix from an lm.rrpp object |
motionpaths |
Simulated motion paths |
na.omit.rrpp.data.frame |
Handle missing values in rrpp.data.frame objects |
ordinate |
Ordination tool for data aligned to another matrix |
pairwise |
Pairwise comparisons of lm.rrpp fits |
PlethMorph |
Plethodon comparative morphological data |
plot.interSubVar |
Plot Function for RRPP |
plot.lm.rrpp |
Plot Function for RRPP |
plot.looCV |
Plot Function for RRPP |
plot.measurement.error |
Plot Function for RRPP |
plot.model.comparison |
Plot Function for RRPP |
plot.ordinate |
Plot Function for RRPP |
plot.predict.lm.rrpp |
Plot Function for RRPP |
plot.trajectory.analysis |
Plot Function for RRPP |
predict.lm.rrpp |
predict for lm.rrpp model fits |
prep.lda |
Linear discriminant function for lm.rrpp model fits |
print.anova.lm.rrpp |
Print/Summary Function for RRPP |
print.coef.lm.rrpp |
Print/Summary Function for RRPP |
print.ICCstats |
Print/Summary Function for RRPP |
print.lm.rrpp |
Print/Summary Function for RRPP |
print.looCV |
Print/Summary Function for RRPP |
print.lr_test |
Print/Summary Function for RRPP |
print.measurement.error |
Print/Summary Function for RRPP |
print.model.comparison |
Print/Summary Function for RRPP |
print.ordinate |
Print/Summary Function for RRPP |
print.pairwise |
Print/Summary Function for RRPP |
print.predict.lm.rrpp |
Print/Summary Function for RRPP |
print.summary.lm.rrpp |
Print/Summary Function for RRPP |
print.summary.manova.lm.rrpp |
Print/Summary Function for RRPP |
print.summary.ordinate |
Print/Summary Function for RRPP |
print.summary.pairwise |
Print/Summary Function for RRPP |
print.summary.trajectory.analysis |
Print/Summary Function for RRPP |
print.trajectory.analysis |
Print/Summary Function for RRPP |
Pupfish |
Landmarks on pupfish |
PupfishHeads |
Landmarks on pupfish heads |
pval |
Obtain P-value from a vector of values |
QRforX |
QR decomposition of linear model design matrices |
residuals.lm.rrpp |
Extract residuals |
reveal.model.designs |
Reveal model designs used in lm.rrpp fit |
rrpp.data.frame |
Create a data frame for lm.rrpp analysis |
scaleCov |
Scaling of a Covariance Matrix |
summary.anova.lm.rrpp |
Print/Summary Function for RRPP |
summary.coef.lm.rrpp |
Print/Summary Function for RRPP |
summary.ICCstats |
Print/Summary Function for RRPP |
summary.lm.rrpp |
Print/Summary Function for RRPP |
summary.looCV |
Print/Summary Function for RRPP |
summary.lr_test |
Print/Summary Function for RRPP |
summary.manova.lm.rrpp |
Print/Summary Function for RRPP |
summary.measurement.error |
Print/Summary Function for RRPP |
summary.model.comparison |
Print/Summary Function for RRPP |
summary.ordinate |
Print/Summary Function for RRPP |
summary.pairwise |
Print/Summary Function for RRPP |
summary.predict.lm.rrpp |
Print/Summary Function for RRPP |
summary.trajectory.analysis |
Print/Summary Function for RRPP |
terms.lm.rrpp |
Extract the terms from an lm.rrpp object |
trajectory.analysis |
Quantify and compare shape change trajectories |
vec.cor.matrix |
Support function for RRPP |