SPArse Matrix

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Documentation for package ‘spam’ version 2.10-0

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A B C D E F G H I K L M N O P R S T U V misc

spam-package SPArse Matrix Package

-- A --

abs-method Mathematical Functions
abs.spam Mathematical Functions
acos-method Mathematical Functions
acos.spam Mathematical Functions
acosh-method Mathematical Functions
acosh.spam Mathematical Functions
adjacency Administrative Districts of Germany
adjacency.landkreis Administrative Districts of Germany
adjacency.spam Administrative Districts of Germany
all-method Rounding of Numbers
all.equal-method Test if Two Sparse Matrices are (Nearly) Equal
all.equal.spam Test if Two Sparse Matrices are (Nearly) Equal
all.spam Rounding of Numbers
any-method Rounding of Numbers
any.spam Rounding of Numbers
apply.spam Apply Functions Over Sparse Matrix Margins
Arith-method Class "spam"
as.dgCMatrix.spam Transformation to Other Sparse Formats
as.dgRMatrix.spam Transformation to Other Sparse Formats
as.matrix-method Class "spam"
as.matrix-method Class "spam.chol.NgPeyton"
as.matrix.spam Class "spam"
as.spam Sparse Matrix Class
as.spam-method Sparse Matrix Class
as.spam-method Class "spam.chol.NgPeyton"
as.spam.chol.NgPeyton Sparse Matrix Class
as.spam.dgCMatrix Transformation to Other Sparse Formats
as.spam.dgRMatrix Transformation to Other Sparse Formats
as.spam.dist Sparse Matrix Class
as.spam.list Sparse Matrix Class
as.spam.matrix Sparse Matrix Class
as.spam.matrix.csr Transformation to Other Sparse Formats
as.spam.numeric Sparse Matrix Class
as.spam.spam Sparse Matrix Class
as.vector Coercion to a Vector
as.vector-method Coercion to a Vector
as.vector.spam Coercion to a Vector
asin-method Mathematical Functions
asin.spam Mathematical Functions
asinh-method Mathematical Functions
asinh.spam Mathematical Functions
assign.spam Basic Linear Algebra for Sparse Matrices
atan-method Mathematical Functions
atan.spam Mathematical Functions
atanh-method Mathematical Functions
atanh.spam Mathematical Functions

-- B --

backsolve Linear Equation Solving for Sparse Matrices
backsolve-method Linear Equation Solving for Sparse Matrices
backsolve-method Class "spam.chol.NgPeyton"
backsolve-methods Linear Equation Solving for Sparse Matrices
backsolve.spam Linear Equation Solving for Sparse Matrices
bandwidth Bandwidth of a Sparse Matrix
bdiag Binds Arrays Corner-to-Corner
bdiag.spam Binds Arrays Corner-to-Corner

-- C --

c-method Class "spam"
c-method Class "spam.chol.NgPeyton"
cbind Combine Sparse Matrices by Rows or Columns
cbind-method Combine Sparse Matrices by Rows or Columns
cbind.spam Combine Sparse Matrices by Rows or Columns
ceiling-method Mathematical Functions
ceiling.spam Mathematical Functions
chol Cholesky Factorization for Sparse Matrices
chol-method Cholesky Factorization for Sparse Matrices
chol-method Class "spam.chol.NgPeyton"
chol.spam Cholesky Factorization for Sparse Matrices
chol2inv Linear Equation Solving for Sparse Matrices
chol2inv-method Linear Equation Solving for Sparse Matrices
chol2inv.spam Linear Equation Solving for Sparse Matrices
circulant.spam Create Circulant Matrices
cleanup Cleaning up sparse matrices
coerce-method Force a 'spam' Object to Belong to a Class
coerce.spam Force a 'spam' Object to Belong to a Class
colindices Slot Modification
colindices<- Slot Modification
colMeans Form Row and Column Sums and Means
colMeans-method Form Row and Column Sums and Means
colMeans.spam Form Row and Column Sums and Means
colSums Form Row and Column Sums and Means
colSums-method Form Row and Column Sums and Means
colSums.spam Form Row and Column Sums and Means
Compare-method Class "spam"
complexities Complexity for Sparse Matrices
complexity Complexity for Sparse Matrices
constructors Slot Modification
cor.sph Covariance Functions
cos-method Mathematical Functions
cos.spam Mathematical Functions
cosh-method Mathematical Functions
cosh.spam Mathematical Functions
cov.exp Covariance Functions
cov.finnmat Covariance Functions
cov.mat Covariance Functions
cov.mat12 Covariance Functions
cov.mat32 Covariance Functions
cov.mat52 Covariance Functions
cov.nug Covariance Functions
cov.sph Covariance Functions
cov.wend1 Covariance Functions
cov.wend2 Covariance Functions
cov.wu1 Covariance Functions
cov.wu2 Covariance Functions
cov.wu3 Covariance Functions
covmat Covariance Functions
crossprod-method Spam Matrix Crossproduct
crossprod.default Spam Matrix Crossproduct
crossprod.spam Spam Matrix Crossproduct
cummax-method Mathematical Functions
cummax.spam Mathematical Functions
cummin-method Mathematical Functions
cummin.spam Mathematical Functions
cumprod-method Mathematical Functions
cumprod.spam Mathematical Functions
cumsum-method Mathematical Functions
cumsum.spam Mathematical Functions

-- D --

det Determinant of a Symmetric Positive Definite Sparse Matrix
det-method Determinant of a Symmetric Positive Definite Sparse Matrix
det.spam Determinant of a Symmetric Positive Definite Sparse Matrix
determinant Determinant of a Symmetric Positive Definite Sparse Matrix
determinant-method Determinant of a Symmetric Positive Definite Sparse Matrix
determinant-method Class "spam.chol.NgPeyton"
determinant.spam Determinant of a Symmetric Positive Definite Sparse Matrix
determinant.spam.chol Determinant of a Symmetric Positive Definite Sparse Matrix
determinant.spam.chol.NgPeyton Determinant of a Symmetric Positive Definite Sparse Matrix
diag Sparse Matrix diagonals
diag-method Sparse Matrix diagonals
diag-method Class "spam.chol.NgPeyton"
diag.assign-method Sparse Matrix diagonals
diag.of.spam Sparse Matrix diagonals
diag.spam Sparse Matrix diagonals
diag.spam<- Sparse Matrix diagonals
diag<- Sparse Matrix diagonals
diag<--method Sparse Matrix diagonals
diag<--method Class "spam.chol.NgPeyton"
diag<-.spam Sparse Matrix diagonals
diff Lagged Differences
diff-method Lagged Differences
diff.spam Lagged Differences
digamma-method Mathematical Functions
digamma.spam Mathematical Functions
dim-method Basic Linear Algebra for Sparse Matrices
dim-method Class "spam.chol.NgPeyton"
dim.spam Dimensions of an Object
dim<--method Dimensions of an Object
dim<--method Class "spam.chol.NgPeyton"
dim<-.spam Dimensions of an Object
dimension<- Slot Modification
display Graphially Represent the Nonzero Entries
display-method Graphially Represent the Nonzero Entries
display-method Class "spam.chol.NgPeyton"
display.spam Graphially Represent the Nonzero Entries
dist.spam Distance Matrix Computation
distance Distance Matrix Computation

-- E --

eigen.spam Eigenvalues for Sparse Matrices
eigen_approx Eigenvalues for Sparse Matrices
entries Slot Modification
entries<- Slot Modification
exp-method Mathematical Functions
exp.spam Mathematical Functions

-- F --

floor-method Mathematical Functions
floor.spam Mathematical Functions
foreign Transformation to Other Sparse Formats
forwardsolve Linear Equation Solving for Sparse Matrices
forwardsolve-method Linear Equation Solving for Sparse Matrices
forwardsolve-method Class "spam.chol.NgPeyton"
forwardsolve-methods Linear Equation Solving for Sparse Matrices
forwardsolve.spam Linear Equation Solving for Sparse Matrices

-- G --

gamma-method Mathematical Functions
gamma.spam Mathematical Functions
germany Meta-data About Administrative Districts of Germany
germany.data Meta-data About Administrative Districts of Germany
germany.graph Administrative Districts of Germany
germany.info Meta-data About Administrative Districts of Germany
germany.plot Plot Administrative Districts of Germany
germany.poly Meta-data About Administrative Districts of Germany
germany.spam Meta-data About Administrative Districts of Germany
getOption.spam Options Settings
gmult Generalized Multiplication
grid_trace2 Two trace plots and a scatter plot.
grid_zoom grid_zoom

-- H --

head-method Return the First or Last Part of an Object
head.spam Return the First or Last Part of an Object

-- I --

image Display a Sparse Matrix as Color Image
image-method Display a Sparse Matrix as Color Image
image-method Class "spam.chol.NgPeyton"
image.spam Display a Sparse Matrix as Color Image
image.spam.chol Display a Sparse Matrix as Color Image
import Read External Matrix Formats
initialize-method Sparse Matrix Class
is.spam Sparse Matrix Class
isSymmetric-method Test if a Sparse Matrix is Symmetric
isSymmetric.spam Test if a Sparse Matrix is Symmetric

-- K --

kronecker-method Kronecker Products on Sparse Matrices
kronecker.default Kronecker Products on Sparse Matrices
kronecker.spam Kronecker Products on Sparse Matrices

-- L --

large matries Large 64-bit matrices require the R package 'spam64'
large matrix Large 64-bit matrices require the R package 'spam64'
large_matries Large 64-bit matrices require the R package 'spam64'
large_matrix Large 64-bit matrices require the R package 'spam64'
length-method Class "spam"
length-method Class "spam.chol.NgPeyton"
length<--method Class "spam"
length<--method Class "spam.chol.NgPeyton"
lgamma-method Mathematical Functions
lgamma.spam Mathematical Functions
log-method Mathematical Functions
log.spam Mathematical Functions
log10-method Mathematical Functions
log10.spam Mathematical Functions
log2-method Mathematical Functions
log2.spam Mathematical Functions
long vector Large 64-bit matrices require the R package 'spam64'
long vectors Large 64-bit matrices require the R package 'spam64'
lower.tri Lower and Upper Triangular Part of a Sparse Matrix
lower.tri-method Class "spam"
lower.tri.spam Lower and Upper Triangular Part of a Sparse Matrix

-- M --

map.landkreis Administrative districts of Germany
Math Mathematical Functions
Math-method Mathematical Functions
Math.spam Mathematical Functions
Math2 Rounding of Numbers
Math2-method Rounding of Numbers
Math2.spam Rounding of Numbers
max-method Rounding of Numbers
max.spam Rounding of Numbers
min-method Rounding of Numbers
min.spam Rounding of Numbers
mle Maximum likelihood estimates
mle.nomean Maximum likelihood estimates
mle.nomean.spam Maximum likelihood estimates
mle.spam Maximum likelihood estimates

-- N --

ncol-method Basic Linear Algebra for Sparse Matrices
nearest.dist Distance Matrix Computation
neg2loglikelihood Maximum likelihood estimates
neg2loglikelihood.nomean Maximum likelihood estimates
neg2loglikelihood.spam Maximum likelihood estimates
norm Basic Linear Algebra for Sparse Matrices
norm-method Basic Linear Algebra for Sparse Matrices
norm.spam Basic Linear Algebra for Sparse Matrices
nrow-method Basic Linear Algebra for Sparse Matrices

-- O --

Ops.spam Basic Linear Algebra for Sparse Matrices
options.spam Options Settings
Oral Oral Cavity Cancer
Oral.spam Oral Cavity Cancer
oral.spam Oral Cavity Cancer
ordering Extract the permutation
ordering-method Extract the permutation
ordering-method Class "spam.chol.NgPeyton"
ordering-methods Extract the permutation
ordering.spam Extract the permutation
ordering.spam.chol Extract the permutation
ordering.spam.chol.NgPeyton Extract the permutation

-- P --

pad Padding a Sparse Matrix
pad.spam Padding a Sparse Matrix
pad<- Padding a Sparse Matrix
pad<--method Padding a Sparse Matrix
pad<-.spam Padding a Sparse Matrix
permutation Permute a Matrix
permutation-method Permute a Matrix
permutation.spam Permute a Matrix
plot-method Class "spam"
plot.spam Basic Linear Algebra for Sparse Matrices
powerboost Specific Options Setting
precmat IGMRF Precision Matrices
precmat.GMRFreglat Create Precision Matrices
precmat.IGMRFirreglat IGMRF Precision Matrices
precmat.IGMRFreglat IGMRF Precision Matrices
precmat.RW1 IGMRF Precision Matrices
precmat.RW2 IGMRF Precision Matrices
precmat.RWn IGMRF Precision Matrices
precmat.season IGMRF Precision Matrices
print Printing and Summarizing Sparse Matrices
print-method Printing and Summarizing Sparse Matrices
print-method Class "spam.chol.NgPeyton"
print.spam Printing and Summarizing Sparse Matrices
print.spam.chol Printing and Summarizing Sparse Matrices
print.spam.chol.NgPeyton Printing and Summarizing Sparse Matrices
print_nnzpos Printing and Summarizing Sparse Matrices
prod-method Rounding of Numbers
prod.spam Rounding of Numbers

-- R --

range-method Rounding of Numbers
range.spam Rounding of Numbers
rbind Combine Sparse Matrices by Rows or Columns
rbind-method Combine Sparse Matrices by Rows or Columns
rbind.spam Combine Sparse Matrices by Rows or Columns
rdist.dist Wrapper for Distance Matrix Computation
read.HB Read External Matrix Formats
read.MM Read External Matrix Formats
rgrf Draw From a Gaussian Random Field
rgrf.spam Draw From a Gaussian Random Field
rmvnorm Draw Multivariate Normals
rmvnorm.canonical Draw Multivariate Normals
rmvnorm.canonical.const Draw Constrainted Multivariate Normals
rmvnorm.cond Draw Conditional Multivariate Normals
rmvnorm.conditional Draw Conditional Multivariate Normals
rmvnorm.conditional.spam Draw Conditional Multivariate Normals
rmvnorm.const Draw Constrainted Multivariate Normals
rmvnorm.prec Draw Multivariate Normals
rmvnorm.prec.const Draw Constrainted Multivariate Normals
rmvnorm.spam Draw Multivariate Normals
rmvt Draw From a Multivariate t-Distribution
rmvt.spam Draw From a Multivariate t-Distribution
round-method Rounding of Numbers
round.spam Rounding of Numbers
rowMeans Form Row and Column Sums and Means
rowMeans-method Form Row and Column Sums and Means
rowMeans.spam Form Row and Column Sums and Means
rowpointers Slot Modification
rowpointers<- Slot Modification
rowSums Form Row and Column Sums and Means
rowSums-method Form Row and Column Sums and Means
rowSums.spam Form Row and Column Sums and Means

-- S --

show-method Class "spam"
show-method Class "spam.chol.NgPeyton"
signif-method Rounding of Numbers
signif.spam Rounding of Numbers
sin-method Mathematical Functions
sin.spam Mathematical Functions
solve Linear Equation Solving for Sparse Matrices
solve-method Linear Equation Solving for Sparse Matrices
solve.spam Linear Equation Solving for Sparse Matrices
SPAM SPArse Matrix Package
Spam SPArse Matrix Package
spam Sparse Matrix Class
spam-class Class "spam"
spam-defunct Defunct Objects in Package 'spam'
spam-method Sparse Matrix Class
spam.chol.NgPeyton-class Class "spam.chol.NgPeyton"
spam.class Class "spam"
spam.creation Sparse Matrix Class
spam.list Sparse Matrix Class
spam.numeric Sparse Matrix Class
spam.ops Basic Linear Algebra for Sparse Matrices
spam.options Options Settings
spam.Version Spam Version Information
spam.version Spam Version Information
spam64 Large 64-bit matrices require the R package 'spam64'
spam_diag Sparse Matrix diagonals
spam_random Create Random Sparse Matrices
spam_rdist Wrapper for Distance Matrix Computation
spam_rdist.earth Wrapper for Distance Matrix Computation
sqrt-method Mathematical Functions
sqrt.spam Mathematical Functions
subset.spam Basic Linear Algebra for Sparse Matrices
sum-method Rounding of Numbers
sum.spam Rounding of Numbers
Summary Rounding of Numbers
Summary-method Rounding of Numbers
summary-method Printing and Summarizing Sparse Matrices
summary-method Class "spam.chol.NgPeyton"
Summary.spam Rounding of Numbers
summary.spam Printing and Summarizing Sparse Matrices
summary.spam.chol Printing and Summarizing Sparse Matrices
summary.spam.chol.NgPeyton Printing and Summarizing Sparse Matrices

-- T --

t-method Class "spam"
t-method Class "spam.chol.NgPeyton"
t.spam Basic Linear Algebra for Sparse Matrices
tail-method Return the First or Last Part of an Object
tail.spam Return the First or Last Part of an Object
tan-method Mathematical Functions
tan.spam Mathematical Functions
tcrossprod-method Spam Matrix Crossproduct
tcrossprod.spam Spam Matrix Crossproduct
toeplitz.spam Create Toeplitz Matrices
trigamma-method Mathematical Functions
trigamma.spam Mathematical Functions
triplet Transform a "spam" Format to Triplets
trunc-method Mathematical Functions
trunc.spam Mathematical Functions

-- U --

update-method Cholesky Factorization for Sparse Matrices
update.spam Cholesky Factorization for Sparse Matrices
update.spam.chol.NgPeyton Cholesky Factorization for Sparse Matrices
upper.tri Lower and Upper Triangular Part of a Sparse Matrix
upper.tri-method Class "spam"
upper.tri.spam Lower and Upper Triangular Part of a Sparse Matrix
UScounties Adjacency Structure of the Counties in the Contiguous United States
UScounties.ndorder Adjacency Structure of the Counties in the Contiguous United States
UScounties.storder Adjacency Structure of the Counties in the Contiguous United States
USprecip Monthly Total Precipitation (mm) for April 1948 in the Contiguous United States

-- V --

validate_spam Validate a Sparse Matrix
validspamobject Defunct Objects in Package 'spam'
var.spam Wappers for Sparse Matrices
version Spam Version Information

-- misc --

!-method Class "spam"
!=-method Basic Linear Algebra for Sparse Matrices
%%-method Basic Linear Algebra for Sparse Matrices
%*%-method Basic Linear Algebra for Sparse Matrices
%*%-methods Basic Linear Algebra for Sparse Matrices
%/%-method Basic Linear Algebra for Sparse Matrices
%d*% Basic Linear Algebra for Sparse Matrices
%d*%-method Basic Linear Algebra for Sparse Matrices
%d+% Basic Linear Algebra for Sparse Matrices
%d+%-method Basic Linear Algebra for Sparse Matrices
&-method Basic Linear Algebra for Sparse Matrices
*-method Basic Linear Algebra for Sparse Matrices
+-method Class "spam"
+-method Basic Linear Algebra for Sparse Matrices
--method Class "spam"
--method Basic Linear Algebra for Sparse Matrices
. SPAM . SPArse Matrix Package
/-method Basic Linear Algebra for Sparse Matrices
64bit Large 64-bit matrices require the R package 'spam64'
64bits Large 64-bit matrices require the R package 'spam64'
<-method Basic Linear Algebra for Sparse Matrices
<=-method Basic Linear Algebra for Sparse Matrices
==-method Basic Linear Algebra for Sparse Matrices
>-method Basic Linear Algebra for Sparse Matrices
>=-method Basic Linear Algebra for Sparse Matrices
[-method Class "spam"
[.spam Basic Linear Algebra for Sparse Matrices
[<--method Class "spam"
[<--method Basic Linear Algebra for Sparse Matrices
[<-.spam Basic Linear Algebra for Sparse Matrices
^-method Basic Linear Algebra for Sparse Matrices
|-method Basic Linear Algebra for Sparse Matrices