Anolis_map |
Anolis map of regimes |
Anolis_traits |
Anolis snout to vent length |
Anolis_tree |
Anolis phylogenetic tree |
control_jive |
Control tuning parameters of the jive algorithm |
format_jive_traits |
Format traits matrix to parse into 'make_jive' function |
hpfun |
Hyper-prior function |
make_jive |
Create a list that can be used as an input to mcmc_bite |
marginal_lik |
Calculate marginal likelihood by thermodynamic integration (LTI) |
mcmc_bite |
MCMC algorithm |
plot_bf |
Plots summary of Bayes Factors calculations |
plot_hp |
plot Hyper-prior function |
plot_jive |
plot input data from a jive object |
plot_mcmc_bite |
Plot trace and density from a log file |
plot_post_beast |
Plot posterior probabilities from beast |
plot_pvo |
Plots estimates of species traits distribution |
sim_jive |
Simulate JIVE process |
sim_mte |
Simulate MTE process |
xml_bite |
Write xml file with model |