Clustering High Dimensional Data with Hidden Markov Model on Variable Blocks

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Documentation for package ‘HDclust’ version 1.0.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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HDclust-package	Clustering high dimensional data with Hidden Markov Model on Variable Blocks
clustControl	Parameters for MBM clustering algorithm.
clustModes	Hierarchical clustering of density modes
getBdim	Accessor for 'bdim' slot
getBdim-method	Accessor for 'bdim' slot
getBIC	Accessor for 'BIC' slot.
getBIC-method	Accessor for 'BIC' slot.
getClsid	Accessor for 'clsid' slot.
getClsid-method	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getClustParam	Accessor for 'clustParam' slot.
getClustParam-method	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getDiagCov	Accessor for 'diagCov' slot.
getDiagCov-method	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
getDim	Accessor for 'dim' slot
getDim-method	Accessor for 'dim' slot
getHmmChain	Accessor for 'HmmChain' slot.
getHmmChain-method	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
getHmmParam	Accessor for parameters of HMM
getHmmParam-method	Class "HMM" to represent parameters associated with a variable block in the HMM-VB
getLoglikehd	Accessor for 'Loglikehd' slot.
getLoglikehd-method	Accessor for 'Loglikehd' slot.
getNb	Accessor for 'nb' slot
getNb-method	Accessor for 'nb' slot
getNumst	Accessor for 'numst' slot
getNumst-method	Accessor for 'numst' slot
getOptHMMVB	Accessor for 'optHMMVB' slot.
getOptHMMVB-method	Class "HMMVBBIC" to represent results of HMM-VB model selection.
getPrenumst	Accessor for 'prenumst' slot
getPrenumst-method	Class "HMM" to represent parameters associated with a variable block in the HMM-VB
getSize	Accessor for 'size' slot.
getSize-method	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
getVarorder	Accessor for 'varorder' slot
getVarorder-method	Accessor for 'varorder' slot
getVb	Accessor for 'VbStructure' slot.
getVb-method	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HDclust	Clustering high dimensional data with Hidden Markov Model on Variable Blocks
HMM	Class "HMM" to represent parameters associated with a variable block in the HMM-VB
HMM-class	Class "HMM" to represent parameters associated with a variable block in the HMM-VB
HMMVB	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HMMVB-class	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
HMMVBBIC	Class "HMMVBBIC" to represent results of HMM-VB model selection.
hmmvbBIC	BIC for HMM-VB
HMMVBBIC-class	Class "HMMVBBIC" to represent results of HMM-VB model selection.
HMMVBclust	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
hmmvbClust	Cluster data with HMM-VB
HMMVBclust-class	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
hmmvbFindModes	Find density modes with HMM-VB
hmmvbTrain	Train HMM-VB
plot-method	Class "HMMVBBIC" to represent results of HMM-VB model selection.
plot-method	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
show-method	Class "HMM" to represent parameters associated with a variable block in the HMM-VB
show-method	Class "HMMVB" to represent a Hidden Markov Model on Variable Blocks (HMM-VB).
show-method	Class "HMMVBBIC" to represent results of HMM-VB model selection.
show-method	Class "HMMVBclust" to represent clustering results with Hidden Markov Model on variable block structure.
show-method	Class "VB" to represent a variable block structure.
sim2	Synthetic dataset used in section 5.1.2 of the reference paper.
sim3	Synthetic dataset used in section 5.1.3 of the reference paper
trainControl	Parameters for HMM-VB training.
VB	Class "VB" to represent a variable block structure.
vb	Make an instance of class "VB"
VB-class	Class "VB" to represent a variable block structure.
vbSearchControl	Parameters for variable block structure search.