A B C D E F G H I L M O P R S T U W
add_allometry | add_allometry |
add_covariance_step | add_covariance_step |
add_covariate_effect | add_covariate_effect |
add_estimation_step | add_estimation_step |
add_iiv | add_iiv |
add_individual_parameter | add_individual_parameter |
add_iov | add_iov |
add_lag_time | add_lag_time |
add_metabolite | add_metabolite |
add_peripheral_compartment | add_peripheral_compartment |
add_pk_iiv | add_pk_iiv |
add_population_parameter | add_population_parameter |
add_time_after_dose | add_time_after_dose |
append_estimation_step_options | append_estimation_step_options |
bump_model_number | bump_model_number |
calculate_aic | calculate_aic |
calculate_bic | calculate_bic |
calculate_corr_from_cov | calculate_corr_from_cov |
calculate_corr_from_prec | calculate_corr_from_prec |
calculate_cov_from_corrse | calculate_cov_from_corrse |
calculate_cov_from_prec | calculate_cov_from_prec |
calculate_epsilon_gradient_expression | calculate_epsilon_gradient_expression |
calculate_eta_gradient_expression | calculate_eta_gradient_expression |
calculate_eta_shrinkage | calculate_eta_shrinkage |
calculate_individual_parameter_statistics | calculate_individual_parameter_statistics |
calculate_individual_shrinkage | calculate_individual_shrinkage |
calculate_parameters_from_ucp | calculate_parameters_from_ucp |
calculate_pk_parameters_statistics | calculate_pk_parameters_statistics |
calculate_prec_from_corrse | calculate_prec_from_corrse |
calculate_prec_from_cov | calculate_prec_from_cov |
calculate_se_from_cov | calculate_se_from_cov |
calculate_se_from_prec | calculate_se_from_prec |
calculate_ucp_scale | calculate_ucp_scale |
check_dataset | check_dataset |
check_high_correlations | check_high_correlations |
check_parameters_near_bounds | check_parameters_near_bounds |
check_pharmpy | Checks version of Pharmpy/pharmr |
cleanup_model | cleanup_model |
convert_model | convert_model |
create_basic_pk_model | create_basic_pk_model |
create_config_template | create_config_template |
create_joint_distribution | create_joint_distribution |
create_report | create_report |
create_results | create_results |
create_rng | create_rng |
create_symbol | create_symbol |
deidentify_data | deidentify_data |
display_odes | display_odes |
drop_columns | drop_columns |
drop_dropped_columns | drop_dropped_columns |
evaluate_epsilon_gradient | evaluate_epsilon_gradient |
evaluate_eta_gradient | evaluate_eta_gradient |
evaluate_expression | evaluate_expression |
evaluate_individual_prediction | evaluate_individual_prediction |
evaluate_population_prediction | evaluate_population_prediction |
evaluate_weighted_residuals | evaluate_weighted_residuals |
expand_additional_doses | expand_additional_doses |
find_clearance_parameters | find_clearance_parameters |
find_volume_parameters | find_volume_parameters |
fit | fit |
fix_or_unfix_parameters | fix_or_unfix_parameters |
fix_parameters | fix_parameters |
fix_parameters_to | fix_parameters_to |
get_baselines | get_baselines |
get_bioavailability | get_bioavailability |
get_cmt | get_cmt |
get_concentration_parameters_from_data | get_concentration_parameters_from_data |
get_config_path | get_config_path |
get_covariate_baselines | get_covariate_baselines |
get_doseid | get_doseid |
get_doses | get_doses |
get_dv_symbol | get_dv_symbol |
get_evid | get_evid |
get_ids | get_ids |
get_individual_parameters | get_individual_parameters |
get_individual_prediction_expression | get_individual_prediction_expression |
get_initial_conditions | get_initial_conditions |
get_lag_times | get_lag_times |
get_mdv | get_mdv |
get_model_code | get_model_code |
get_model_covariates | get_model_covariates |
get_number_of_individuals | get_number_of_individuals |
get_number_of_observations | get_number_of_observations |
get_number_of_observations_per_individual | get_number_of_observations_per_individual |
get_observations | get_observations |
get_observation_expression | get_observation_expression |
get_omegas | get_omegas |
get_pk_parameters | get_pk_parameters |
get_population_prediction_expression | get_population_prediction_expression |
get_rv_parameters | get_rv_parameters |
get_sigmas | get_sigmas |
get_thetas | get_thetas |
get_unit_of | get_unit_of |
get_zero_order_inputs | get_zero_order_inputs |
greekify_model | greekify_model |
has_additive_error_model | has_additive_error_model |
has_combined_error_model | has_combined_error_model |
has_covariate_effect | has_covariate_effect |
has_first_order_elimination | has_first_order_elimination |
has_linear_odes | has_linear_odes |
has_linear_odes_with_real_eigenvalues | has_linear_odes_with_real_eigenvalues |
has_michaelis_menten_elimination | has_michaelis_menten_elimination |
has_mixed_mm_fo_elimination | has_mixed_mm_fo_elimination |
has_odes | has_odes |
has_proportional_error_model | has_proportional_error_model |
has_random_effect | has_random_effect |
has_weighted_error_model | has_weighted_error_model |
has_zero_order_absorption | has_zero_order_absorption |
has_zero_order_elimination | has_zero_order_elimination |
install_pharmpy | Install Pharmpy |
install_pharmpy_devel | Install Pharmpy (with specified version) |
is_linearized | is_linearized |
is_real | is_real |
list_time_varying_covariates | list_time_varying_covariates |
load_example_model | load_example_model |
load_example_modelfit_results | load_example_modelfit_results |
make_declarative | make_declarative |
mu_reference_model | mu_reference_model |
omit_data | omit_data |
plot_individual_predictions | plot_individual_predictions |
plot_iofv_vs_iofv | plot_iofv_vs_iofv |
plot_transformed_eta_distributions | plot_transformed_eta_distributions |
predict_influential_individuals | predict_influential_individuals |
predict_influential_outliers | predict_influential_outliers |
predict_outliers | predict_outliers |
print_fit_summary | print_fit_summary |
print_model_code | print_model_code |
print_model_symbols | print_model_symbols |
print_pharmpy_version | Print pharmpy version |
rank_models | rank_models |
read_dataset_from_datainfo | read_dataset_from_datainfo |
read_model | read_model |
read_modelfit_results | read_modelfit_results |
read_model_from_string | read_model_from_string |
read_results | read_results |
remove_covariance_step | remove_covariance_step |
remove_covariate_effect | remove_covariate_effect |
remove_error_model | remove_error_model |
remove_estimation_step | remove_estimation_step |
remove_iiv | remove_iiv |
remove_iov | remove_iov |
remove_lag_time | remove_lag_time |
remove_loq_data | remove_loq_data |
remove_peripheral_compartment | remove_peripheral_compartment |
remove_unused_parameters_and_rvs | remove_unused_parameters_and_rvs |
rename_symbols | rename_symbols |
resample_data | resample_data |
reset_index | Reset index |
reset_indices_results | Reset result indices |
resume_tool | resume_tool |
retrieve_final_model | retrieve_final_model |
retrieve_models | retrieve_models |
run_allometry | run_allometry |
run_amd | run_amd |
run_bootstrap | run_bootstrap |
run_covsearch | run_covsearch |
run_estmethod | run_estmethod |
run_iivsearch | run_iivsearch |
run_iovsearch | run_iovsearch |
run_modelfit | run_modelfit |
run_modelsearch | run_modelsearch |
run_ruvsearch | run_ruvsearch |
run_tool | run_tool |
sample_individual_estimates | sample_individual_estimates |
sample_parameters_from_covariance_matrix | sample_parameters_from_covariance_matrix |
sample_parameters_uniformly | sample_parameters_uniformly |
set_additive_error_model | set_additive_error_model |
set_bolus_absorption | set_bolus_absorption |
set_combined_error_model | set_combined_error_model |
set_covariates | set_covariates |
set_dtbs_error_model | set_dtbs_error_model |
set_dvid | set_dvid |
set_estimation_step | set_estimation_step |
set_evaluation_step | set_evaluation_step |
set_first_order_absorption | set_first_order_absorption |
set_first_order_elimination | set_first_order_elimination |
set_iiv_on_ruv | set_iiv_on_ruv |
set_initial_condition | set_initial_condition |
set_initial_estimates | set_initial_estimates |
set_lower_bounds | set_lower_bounds |
set_michaelis_menten_elimination | set_michaelis_menten_elimination |
set_mixed_mm_fo_elimination | set_mixed_mm_fo_elimination |
set_name | set_name |
set_ode_solver | set_ode_solver |
set_peripheral_compartments | set_peripheral_compartments |
set_power_on_ruv | set_power_on_ruv |
set_proportional_error_model | set_proportional_error_model |
set_seq_zo_fo_absorption | set_seq_zo_fo_absorption |
set_time_varying_error_model | set_time_varying_error_model |
set_tmdd | set_tmdd |
set_transit_compartments | set_transit_compartments |
set_upper_bounds | set_upper_bounds |
set_weighted_error_model | set_weighted_error_model |
set_zero_order_absorption | set_zero_order_absorption |
set_zero_order_elimination | set_zero_order_elimination |
set_zero_order_input | set_zero_order_input |
simplify_expression | simplify_expression |
solve_ode_system | solve_ode_system |
split_joint_distribution | split_joint_distribution |
summarize_errors | summarize_errors |
summarize_individuals | summarize_individuals |
summarize_individuals_count_table | summarize_individuals_count_table |
summarize_modelfit_results | summarize_modelfit_results |
transform_blq | transform_blq |
transform_etas_boxcox | transform_etas_boxcox |
transform_etas_john_draper | transform_etas_john_draper |
transform_etas_tdist | transform_etas_tdist |
translate_nmtran_time | translate_nmtran_time |
unconstrain_parameters | unconstrain_parameters |
undrop_columns | undrop_columns |
unfix_parameters | unfix_parameters |
unfix_parameters_to | unfix_parameters_to |
update_initial_individual_estimates | update_initial_individual_estimates |
update_inits | update_inits |
use_thetas_for_error_stdev | use_thetas_for_error_stdev |
write_csv | write_csv |
write_model | write_model |
write_results | write_results |