Congruent Rate Analyses in Birth-Death Scenarios

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Documentation for package ‘CRABS’ version 1.1.0

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CRABS-package CRABS: Congruent Rate Analyses in Birth-death Scenarios
congruent.models Create a set of congruent models
CRABS CRABS: Congruent Rate Analyses in Birth-death Scenarios
crabs.loglikelihood Compute likelihood
create.model Computes the congruent class, i.e., the pulled rates.
model2df model2df
plot.CRABS Plots the rate functions including the pulled rates.
plot.CRABSset Plots the rate functions
primates Primates phylogenetic tree
primates_ebd RevBayes Primates birth-death model
primates_ebd_log Primates birth-death model
primates_ebd_tess TESS Primates birth-death model
primates_ebd_treepar TreePar Primates birth-death model
print.CRABS Print method for CRABS object
print.CRABSposterior Title
print.CRABSset Print method for CRABSset object
print.CRABSsets print.CRABSsets
read.RevBayes read RevBayes log file
sample.basic.models Samples simple increase/decrease models through time with noise.
sample.congruence.class Stochastic exploration of congruent models.
sample.congruence.class.posterior Stochastic exploration of congruent models for all samples in the posterior
sample.rates Sample custom functions through time.
summarize.posterior Summarize trends in the posterior
summarize.trends Summarize trends in the congruence class