as.SimilarityMatrix |
Convert a matrix to a similarity matrix. 'as.SimilarityMatrix' convert an adjacency matrix to a similarity matrix. |
as.symmetricAdjacencyMatrix |
convert to a symmetric adjacency matrix |
getEigenvalueList |
generate eigenvalues for all ensemble matrices 'getEigenvalueList' get eigenvalues from ensemble matrices |
getEns |
generate ensemble matrix 'getEns' get ensemble matrix from given similarity matrix and temperature |
getEnsList |
generating a list of ensemble matrices based on the similarity matrix and temperatures |
GetSim |
'GetSim' get similarity matrix from a distance matrix |
monkeyGrooming |
Grooming network data |
plotCLUSTERS |
generate tree plots for each ensemble matrix 'plotCLUSTERS' plot all cluster trees |
plotMultiEigenvalues |
plot eigenvalues 'plotMultiEigenvalues' plot eigenvalues to determine number of communities by finding the elbow point |
plotTheCluster |
generate tree plots for selected ensemble matrix 'plotTrees' plot one cluster tree |
temperatureSample |
generate temperatures 'temperatureSample' generate tempatures based on either random or fixed intervals |