Diet Mendelian Randomization


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Documentation for package ‘MRZero’ version 0.2.0

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calc.rho Data on effect of calcium on fasting glucose (correlated variants)
calcium Data on effect of calcium on fasting glucose (correlated variants)
calciumse Data on effect of calcium on fasting glucose (correlated variants)
chdlodds Data on lipid effects on coronary artery disease (uncorrelated variants)
chdloddsse Data on lipid effects on coronary artery disease (uncorrelated variants)
CLR-class CLR Class
cML_estimate Estimate with Regular Likelihood
cML_estimate_random Estimate with Regular Likelihood Using Multiple Random Start Points
cML_SdTheta Standard Error of Estimated Theta
DIVW-class DIVW Class
Egger-class Egger Class
fastgluc Data on effect of calcium on fasting glucose (correlated variants)
fastglucse Data on effect of calcium on fasting glucose (correlated variants)
hdlc Data on lipid effects on coronary artery disease (uncorrelated variants)
hdlcse Data on lipid effects on coronary artery disease (uncorrelated variants)
IVW-class IVW Class
ldlc Data on lipid effects on coronary artery disease (uncorrelated variants)
ldlcse Data on lipid effects on coronary artery disease (uncorrelated variants)
lipid_eaf Data on lipid effects on coronary artery disease (uncorrelated variants)
lipid_effect Data on lipid effects on coronary artery disease (uncorrelated variants)
lipid_other Data on lipid effects on coronary artery disease (uncorrelated variants)
MaxLik-class MaxLik Class
MRAll-class MRAll Class
MRcML-class MRcML Class
MRConMix-class MRConMix Class
MRHetPen-class MRHetPen Class
MRInput-class MRInput Class
MRLasso-class MRLasso class
MRMBE-class MRMBE Class
MRMVInput-class MRMVInput Class
mr_allmethods Mendelian randomization estimation using all methods
mr_allmethods-method Mendelian randomization estimation using all methods
mr_clr Conditional likelihood ratio (CLR) method
mr_clr-method Conditional likelihood ratio (CLR) method
mr_cML Constrained maximum likelihood (cML) method
mr_cML-method Constrained maximum likelihood (cML) method
mr_conmix Contamination mixture method
mr_conmix-method Contamination mixture method
mr_divw Debiased inverse-variance weighted method
mr_divw-method Debiased inverse-variance weighted method
mr_egger MR-Egger method
mr_egger-method MR-Egger method
mr_forest Draw a forest plot of causal estimates
mr_forest-method Draw a forest plot of causal estimates
mr_funnel Draw a funnel plot of variant-specific estimates
mr_funnel-method Draw a funnel plot of variant-specific estimates
mr_input Inputting and formatting data for use in causal estimation
mr_ivw Inverse-variance weighted method
mr_ivw-method Inverse-variance weighted method
mr_lasso MR-Lasso method
mr_lasso-method MR-Lasso method
mr_loo Leave-one-out estimates
mr_loo-method Leave-one-out estimates
mr_maxlik Maximum-likelihood method
mr_maxlik-method Maximum-likelihood method
mr_mbe Mode-based method of Hartwig
mr_mbe-method Mode-based method of Hartwig
mr_median Median-based method
mr_median-method Median-based method
mr_mvegger Multivariable MR-Egger method
mr_mvegger-method Multivariable MR-Egger method
mr_mvgmm Multivariable generalized method of moments (GMM) method
mr_mvgmm-method Multivariable generalized method of moments (GMM) method
mr_mvinput Inputting and formatting data for use in causal estimation
mr_mvivw Multivariable inverse-variance weighted method
mr_mvivw-method Multivariable inverse-variance weighted method
mr_mvivwme Multivariable inverse-variance weighted method with measurement error
mr_mvivwme-method Multivariable inverse-variance weighted method with measurement error
mr_mvlasso Multivariable MR-Lasso method
mr_mvlasso-method Multivariable MR-Lasso method
mr_mvmedian Multivariable median-based method
mr_mvmedian-method Multivariable median-based method
mr_mvpcgmm Multivariable principal components generalized method of moments (PC-GMM) method
mr_mvpcgmm-method Multivariable principal components generalized method of moments (PC-GMM) method
mr_pcgmm Univariable principal components generalized method of moments (PC-GMM) method
mr_pcgmm-method Univariable principal components generalized method of moments (PC-GMM) method
mr_pivw Penalized inverse-variance weighted method
mr_pivw-method Penalized inverse-variance weighted method
mr_plot Draw a scatter plot of the genetic associations and/or causal estimates
mr_plot-method Draw a scatter plot of the genetic associations and/or causal estimates
MVEgger-class MVEgger Class
MVGMM-class MVGMM Class
MVIVW-class MVIVW Class
MVIVWME-class MVIVWME Class
MVLasso-class MRMVLasso class
MVMedian-class MRMVMedian class
MVMRcML-class MVMRcML Class
MVPCGMM-class MVPCGMM Class
PCGMM-class PCGMM Class
PIVW-class PIVW Class
trig Data on lipid effects on coronary artery disease (uncorrelated variants)
trigse Data on lipid effects on coronary artery disease (uncorrelated variants)
WeightedMedian-class WeightedMedian Class