Shrinkage Based Forest Plots

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Documentation for package ‘bonsaiforest’ version 0.1.0

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ahr_estimation Average Hazard Ratio Estimation
ahr_from_km Average Hazard Estimation based on Kaplan-Meier Estimates
compare Compare Treatment Estimate Methods
design_dummy1 Design Dummy Subgroup x_1a
design_matrix1 Design Matrix Subgroup x_1a
elastic_net Elastic Net Penalization Model Estimation
elastic_net_fit_bin Elastic Net Fit Binary
elastic_net_fit_surv Elastic Net Fit Survival
elastic_net_surv H0, Coefficients Elastic Net Survival Model and Matrices
est_coef_bin1 Estimated coefficients elastic net Binary
example_data Example data
generate_stacked_data Generation of Stacked Data by Subgroups
horseshoe Bayesian Shrinkage Model Estimation
horseshoe_fit_bin Horseshoe Fit Binary
horseshoe_fit_surv Horseshoe Fit Survival
lor_estimation Estimation of Log-Odds Ratio
naive Naive Model Estimation
naivepop Naive Overall Population Model Estimation
naivepop_fit_bin Naivepop Fit Binary
naivepop_fit_surv Naivepop Fit Survival
naive_fit_bin Naive Fit Binary
naive_fit_surv Naive Fit Survival
plot.compare.data Compare Forest Plots
plot.summary.elastic_net Forest plot Summary Elastic Net
plot.summary.horseshoe Forest plot Summary Horseshoe
plot.summary.naive Forest plot Summary Naive
preprocess Data Preprocessing
print.summary.elastic_net Print Function for Elastic Net Summary
print.summary.horseshoe Print Function for Horseshoe Summary
print.summary.naive Print Function for Naive Summary
print.summary.naivepop Print Function for Naivepop Summary
simul_covariates Generation of a Design Matrix for Simulations
simul_data Simulate Covariates and Progression Free Survival Data
simul_pfs Simulation of Progression Free Survival Times
subgroups Subgroup Treatment Effect
summary.elastic_net Summary Elastic Net Function
summary.horseshoe Summary Horseshoe Function
summary.naive Summary Naive
summary.naivepop Summary Naivepop Function
survival_curves Average Survival Curves
trt_horseshoe Subgroup Treatment Effect Horseshoe