photosynthesis-package |
'photosynthesis' package |
.get_gbc |
Conductance to CO2 (mol / m^2 / s) |
.get_gmc |
Conductance to CO2 (mol / m^2 / s) |
.get_gsc |
Conductance to CO2 (mol / m^2 / s) |
.get_gtc |
Conductance to CO2 (mol / m^2 / s) |
.get_guc |
Conductance to CO2 (mol / m^2 / s) |
analyze_sensitivity |
Running 2-parameter sensitivity analyses |
aq_response |
Non-rectangular hyperbolic model of light responses |
A_demand |
CO2 supply and demand function (mol / m^2 s) |
A_supply |
CO2 supply and demand function (mol / m^2 s) |
bake |
Leaf parameter temperature responses |
baked-class |
S3 class baked |
bake_par |
S3 class bake_par |
calculated-parameters |
Get default functions for calculated parameters in photosynthesis |
calculate_j |
Inverse non-rectangular hyperbola for J_max calculation |
calculate_jmax |
Inverse non-rectangular hyperbola for J_max calculation |
CO2_conductance |
Conductance to CO2 (mol / m^2 / s) |
compile_data |
Compiling outputs from lists |
compute_sensitivity |
Computing measures of sensitivity |
constants |
S3 class constants |
enviro_par |
S3 class enviro_par |
fit_aci_response |
Fitting ACi curves |
fit_aq_response |
Fitting light responses of net CO2 assimilation |
fit_aq_response2 |
Fit photosynthetic light-response curves |
fit_gs_model |
Fitting stomatal conductance models |
fit_g_mc_variableJ |
Fitting mesophyll conductance with the variable J method |
fit_hydra_vuln_curve |
Fitting hydraulic vulnerability curves |
fit_many |
Fitting many functions across groups |
fit_photosynthesis |
Fit photosynthetic models with gas-exchange data |
fit_PV_curve |
Fitting pressure-volume curves |
fit_r_light2 |
Fit models to estimate light respiration (R_\mathrm{d}) |
fit_r_light_kok |
Estimating light respiration |
fit_r_light_WalkerOrt |
Estimating light respiration |
fit_r_light_yin |
Estimating light respiration |
fit_t_response |
Fitting temperature responses |
FvCB |
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
get_all_models |
Get default model |
get_default_model |
Get default model |
get_f_parameter |
Get default functions for calculated parameters in photosynthesis |
gs_mod_ballberry |
Stomatal conductance models |
gs_mod_leuning |
Stomatal conductance models |
gs_mod_opti |
Stomatal conductance models |
gs_mod_optifull |
Stomatal conductance models |
J |
J: Rate of electron transport (umol/m^2/s) |
leaf_par |
S3 class leaf_par |
make_bakepar |
Make lists of parameters for 'photosynthesis' |
make_constants |
Make lists of parameters for 'photosynthesis' |
make_enviropar |
Make lists of parameters for 'photosynthesis' |
make_leafpar |
Make lists of parameters for 'photosynthesis' |
make_parameters |
Make lists of parameters for 'photosynthesis' |
marshall_biscoe_1980 |
Get default model |
parameter_names |
Get vector of parameter names |
photo |
Simulate C3 photosynthesis |
photosynthesis |
Simulate C3 photosynthesis |
photo_parameters |
Input parameters to simulate C3 photosynthesis using 'photosynthesis()' |
ppm2pa |
Convert pressure from PPM to Pascals |
print_graphs |
Printing graphs to system |
read_li6800 |
Read a LI-COR file |
read_licor |
Read a LI-COR file |
required_variables |
Variables required for *photosynthesis* models |
simulate_error |
Simulate gas exchange data with measurement error |
temp_resp1 |
Leaf parameter temperature responses |
temp_resp2 |
Leaf parameter temperature responses |
t_response_arrhenius |
Temperature response functions |
t_response_arrhenius_kruse |
Temperature response functions |
t_response_arrhenius_medlyn |
Temperature response functions |
t_response_arrhenius_topt |
Temperature response functions |
t_response_calc_dS |
Temperature response functions |
t_response_calc_topt |
Temperature response functions |
t_response_heskel |
Temperature response functions |
t_response_mmrt |
Temperature response functions |
W_carbox |
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
W_regen |
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |
W_tpu |
Farquhar-von Caemmerer-Berry (FvCB) C3 photosynthesis model |