Predict Environmental Conditions from Biological Observations
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Documentation for package ‘bio.infer’ version 1.3-6
Help Pages
| bio.infer-package | Scripts for computing biological inferences |
| bcnt.emapw | Benthic count data for the western United States |
| bcnt.OR | Benthic count data for western Oregon |
| bcnt.otu.OR | Benthic count data with OTU |
| bcnt.tax.OR | Benthic count with taxonomic hierarchy |
| bio.infer | Scripts for computing biological inferences |
| coef.east.sed | Regression coefficients for eastern U.S. sediment |
| coef.west.wt | Weighted regression coefficients for western U.S. |
| correct.taxanames | Correct unrecognized taxon names |
| envdata.emapw | Environmental data from the western United States |
| envdata.OR | Environmental data from western OR |
| flist.data | List available data |
| flist.match | Selects data files matching search string |
| formtomat | Analyze formula string |
| get.dupe.sel | Get duplicate selection |
| get.otu | Defines operational taxonomic units (OTUs) |
| get.taxon.names | Get taxon names from benthic count file |
| get.taxonomic | Merge benthic count data with the ITIS taxonomy table |
| get.valid.names | Get taxon names from benthic count file |
| in.ITIS | Check to see if taxon name is in ITIS |
| incorp.correct | Incorporate taxon name revisions |
| infergui | Graphical User Interface for biological inferences |
| itis.ttable | ITIS taxonomic hierarchy table |
| load.itis | Load ITIS taxon table |
| load.revised.otu | Loads a user-revised OTU table |
| load.revised.species | Loads a user-revised list of species names |
| locate.dupes | Locate duplicated taxon names |
| make.fulltab1 | Make full taxonomic table |
| make.species | Generate species names |
| makess | Make a site-OTU matrix |
| mlsolve | Maximum likelihood inferences |
| modalDialog | Modal dialog box using TclTK |
| output.tax.table | Output final taxonomic table |
| parse.taxon.name | Parse taxon name |
| remove.dupes | Remove unselected duplicates from taxon table |
| resolve.mult | Resolve cases in which two taxa are found in ITIS |
| sel.coeffile | Select coefficient file |
| ss.OR | site-OTU matrix for western Oregon |
| taxon.env | Estimate taxon-environment relationships |
| tklist.modal | Modal select list dialog using TclTk |
| trait.feeding | Feeding traits for benthic invertebrates |
| trait.habit | Habit traits for benthic invertebrates |
| trait.stat | Compute trait metrics |
| view.te | View taxon-environment relationships |