!=.bi_model |
Check if two models are unequal |
==.bi_model |
Check if two models are equal |
add_block |
Add a block to a LibBi model |
add_block.bi_model |
Add a block to a LibBi model |
attach_data |
Attach a new file or data set to a 'libbi' object |
attach_data.libbi |
Attach a new file or data set to a 'libbi' object |
bi_contents |
Bi contents |
bi_file_summary |
NetCDF File Summary |
bi_generate_dataset |
Bi Generate Dataset |
bi_model |
Bi Model |
bi_read |
Bi Read |
bi_write |
Create (e.g., init or observation) files for LibBi |
enable_outputs |
Enable outputting variables in a 'bi_model' |
Equals.bi_model |
Check if two models are equal |
Extract.bi_model |
Subset model lines |
Extract_assign.bi_model |
Subset and replace model lines |
extract_sample |
Extract a sample from a 'LibBi' run. |
filter |
Using the LibBi wrapper to filter |
filter.bi_model |
Using the LibBi wrapper to filter |
filter.libbi |
Using the LibBi wrapper to filter |
fix |
Fix noise term, state or parameter of a libbi model |
fix.bi_model |
Fix noise term, state or parameter of a libbi model |
flatten |
Flatten list of data frames This function takes a list of data frames (such as, for example, returned by 'bi_read') and converts it to a flat data frame |
generate_dataset |
Generate Dataset |
get_block |
Get the contents of a block in a LibBi model |
get_block.bi_model |
Get the contents of a block in a LibBi model |
get_const |
Get constants in a LibBi model |
get_dims |
Get dimensions in a LibBi model |
get_name |
Get the name of a bi model |
get_name.bi_model |
Get the name of a bi model |
get_traces |
Get the parameter traces |
insert_lines |
Insert lines in a LibBi model |
insert_lines.bi_model |
Insert lines in a LibBi model |
join |
Join multiple 'libbi' objects |
join.libbi |
Join multiple 'libbi' objects |
libbi |
LibBi Wrapper |
logLik |
Using the LibBi wrapper to logLik |
logLik.libbi |
Using the LibBi wrapper to logLik |
optimise |
Using the LibBi wrapper to optimise |
optimise.bi_model |
Using the LibBi wrapper to optimise |
optimise.libbi |
Using the LibBi wrapper to optimise |
predict |
Using the LibBi wrapper to predict |
predict.libbi |
Using the LibBi wrapper to predict |
print_log |
Print the log file a 'libbi' object |
read_libbi |
Read results of a 'LibBi' run from an RDS file or from a folder. This completely reconstructs the saved 'LibBi' object |
remove_lines |
Remove line(s) and/or block(s) in a libbi model |
remove_lines.bi_model |
Remove line(s) and/or block(s) in a libbi model |
remove_vars |
Remove variables |
replace_all |
Replace all instances of a string with another in a model |
replace_all.bi_model |
Replace all instances of a string with another in a model |
rewrite |
Using the LibBi wrapper to rewrite |
rewrite.bi_model |
Using the LibBi wrapper to rewrite |
rewrite.libbi |
Using the LibBi wrapper to rewrite |
run |
Using the LibBi wrapper to launch LibBi |
run.libbi |
Using the LibBi wrapper to launch LibBi |
sample |
Using the LibBi wrapper to sample |
sample.bi_model |
Using the LibBi wrapper to sample |
sample.libbi |
Using the LibBi wrapper to sample |
sample_obs |
Sample observations from a LibBi model that has been run |
save_libbi |
Write results of a 'LibBi' run to an RDS file |
save_libbi.libbi |
Write results of a 'LibBi' run to an RDS file |
set_name |
Set the name of a bi model |
set_name.bi_model |
Set the name of a bi model |
simulate |
Using the LibBi wrapper to simulate |
simulate.bi_model |
Using the LibBi wrapper to simulate |
simulate.libbi |
Using the LibBi wrapper to simulate |
summary |
Print summary information about a 'libbi' object |
summary.libbi |
Print summary information about a 'libbi' object |
Unequals.bi_model |
Check if two models are unequal |
update |
Update a libbi object |
update.libbi |
Update a libbi object |
var_names |
Get variable names in a LibBi model |
write_model |
Writes a bi model to a file. |
write_model.bi_model |
Writes a bi model to a file. |
write_model.libbi |
Writes a bi model to a file. |
[.bi_model |
Subset model lines |
[<-.bi_model |
Subset and replace model lines |
`!=.bi_model` |
Check if two models are unequal |
`==.bi_model` |
Check if two models are equal |
`[.bi_model` |
Subset model lines |
`[<-.bi_model` |
Subset and replace model lines |