assign_colorsAnnotation |
Assing Colors to Class |
Chow_GeneExpData |
Chow gene expression data |
Chow_MetaboliteData |
Chow metabolite data |
Compare_Triplets |
Compare triplets |
Compare_VertexClasses_sharedEdgeFeatures |
Table VertexClass pairs of shared Edge Features |
CoNI |
Correlation guided Network Integration |
CoNIResultsHFDToy |
Toy data HFD results |
CoNIResults_Chow |
CoNI Results Chow |
CoNIResults_HFD |
CoNI Results HFD |
createBipartiteGraph |
Bipartite Network |
create_edgeFBarplot |
Vertex-class pairs profile of one shared edge feature |
create_GlobalBarplot |
Vertex-class pairs profile of shared features |
create_stackedGlobalBarplot_perTreatment |
Stacked Global Barplot (One treatment) |
find_localControllingFeatures |
Find local controlling features |
GeneExpToy |
Toy data gene expression |
generate_network |
Create network |
getstackedGlobalBarplot_and_Grid |
Stacked Global Barplot Side-by-side (two treatments) |
getVertexsPerEdgeFeature |
Vertex Class profile per edge feature (one treatment) |
getVertexsPerEdgeFeature_and_Grid |
Vertex-Class profile per edge feature Side-by-Side (two treatments) |
HFD_GeneExpData |
HFD gene expression data |
HFD_MetaboliteData |
HFD metabolite data |
MetaboExpToy |
Toy data metabolite expression |
MetaboliteAnnotation |
Metabolite Annotation |
MetColorTable |
Toy data annotation |
NetStats |
Network Statistics |
plotPcorvsCor |
Correlation vs Partial correlation |
tableLCFs_VFs |
Table local controlling edge features and vertex pairs |
top_n_LF_byMagnitude |
Linker Features by magnitude of effect |
VertexClassesSharedGenes_HFDvsChow |
Toy data comparison treatments |