Correlation Guided Network Integration (CoNI)

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Documentation for package ‘CoNI’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

assign_colorsAnnotation	Assing Colors to Class
Chow_GeneExpData	Chow gene expression data
Chow_MetaboliteData	Chow metabolite data
Compare_Triplets	Compare triplets
Compare_VertexClasses_sharedEdgeFeatures	Table VertexClass pairs of shared Edge Features
CoNI	Correlation guided Network Integration
CoNIResultsHFDToy	Toy data HFD results
CoNIResults_Chow	CoNI Results Chow
CoNIResults_HFD	CoNI Results HFD
createBipartiteGraph	Bipartite Network
create_edgeFBarplot	Vertex-class pairs profile of one shared edge feature
create_GlobalBarplot	Vertex-class pairs profile of shared features
create_stackedGlobalBarplot_perTreatment	Stacked Global Barplot (One treatment)
find_localControllingFeatures	Find local controlling features
GeneExpToy	Toy data gene expression
generate_network	Create network
getstackedGlobalBarplot_and_Grid	Stacked Global Barplot Side-by-side (two treatments)
getVertexsPerEdgeFeature	Vertex Class profile per edge feature (one treatment)
getVertexsPerEdgeFeature_and_Grid	Vertex-Class profile per edge feature Side-by-Side (two treatments)
HFD_GeneExpData	HFD gene expression data
HFD_MetaboliteData	HFD metabolite data
MetaboExpToy	Toy data metabolite expression
MetaboliteAnnotation	Metabolite Annotation
MetColorTable	Toy data annotation
NetStats	Network Statistics
plotPcorvsCor	Correlation vs Partial correlation
tableLCFs_VFs	Table local controlling edge features and vertex pairs
top_n_LF_byMagnitude	Linker Features by magnitude of effect
VertexClassesSharedGenes_HFDvsChow	Toy data comparison treatments