data_transform |
Pseudotime based Expression Data Transformation |
get_dtw_dist_bidirectional |
Bidirectional DTW Distance |
get_dtw_dist_mat |
DTW distance matrix for all genes |
get_networks |
Get the list of sub-networks |
matrix2adj |
Convert distance matrix to adjacency dataframe |
module_networks |
Get module level networks |
pGRN |
pGRN: creates gene regulatory network based on single cell pseudotime information |
pGRNDB |
pGRN example data |
plot_network |
Plot stationary network |
plot_network_i |
Plot interactive network |
run_dtw |
Get network adjacency dataframe based on DTW method |
run_granger_test |
Use Granger-causality Test to get gene-gene regulatory relationship |
slideWindows |
Sliding Window Average |