sonicLength-package |
Calibration of Number of Length Variants |
A1 |
HTLV-1 Fragment Length Data |
dfrag |
Simple Fragment Length Distribution |
estAbund |
estimate Abundances from sonicated samples |
Ey.given.x |
E-Step for Abundance Estimation |
maxEM |
maximum likelihood estimates relative abundances |
maxEM.iter.control |
iteration controls |
mstep |
M-step to maximize theta |
pfrag |
Simple Fragment Length Distribution |
phi.update.lframe |
estimate phi |
pr.y.given.x |
E-Step for Abundance Estimation |
qfrag |
Simple Fragment Length Distribution |
rfrag |
Simple Fragment Length Distribution |
simSonic |
Simulate Sonicated Data |
sonicLength |
Calibration of Number of Length Variants |