demoSample |
Sample table of demographic information |
diseaseDxIcdMap |
Mapping of diseases and diagnostic ICD codes |
diseaseHpoMap |
Mapping of Mendelian diseases and their clinical features |
getDxStatus |
Identify cases and controls for Mendelian diseases |
getGeneticAssociations |
Perform association tests between phenotype risk scores and genotypes |
getPhecodeOccurrences |
Map ICD code occurrences to phecode occurrences |
getResidualScores |
Calculate residual phenotype risk scores |
getScores |
Calculate phenotype risk scores |
getWeights |
Calculate phecode-specific weights for phenotype risk scores |
hpoPhecodeMap |
Mapping of HPO terms and phecodes |
icdPhecodeMap |
Mapping of ICD codes and phecodes |
icdSample |
Sample table of ICD occurrences |
mapDiseaseToPhecode |
Map diseases to phecodes via HPO terms |
preCalcWeights |
Pre-calculated weights for calculating phenotype risk scores |