eicm-package |
eicm: Explicit Interaction Community Models |
as.eicm |
Define a parameterized EICM model |
coef.eicm |
Extract EICM model coefficients |
coefficientComparisonPlot |
Diagnostic monitor plots for EICM |
confint.eicm |
Confidence intervals for EICM parameters |
eicm |
Fit and select an Explicit Interaction Community Model (EICM) |
eicm.data |
Define a data object for a EICM model |
eicm.fit |
Estimate a EICM model |
eicm.matrix |
Define a model object for a EICM model |
eicm.options |
Set EICM fitting options |
generateEICM |
Generate EICM model following a Beta frequency distribution |
interactionPlot |
Compare two interaction matrices |
isCyclic |
Is the adjacency matrix a cyclic graph? |
logLik.eicm |
EICM (penalized) log-likelihood |
plot.confint.eicm |
Plot EICM estimates and confidence intervals |
plot.eicm |
Quick plot EICM results |
plot.eicm.list |
Quick plot EICM results |
plot.profile.eicm |
Plot EICM likelihood profile |
plotNetworkFromMatrix |
Plot graphs from adjacency matrices |
predict.eicm |
Predict method for EICM fits |
print.eicm.matrix |
Print EICM model matrix |
profile.eicm |
Likelihood profiles for EICMs |
truemodel |
A parameterized EICM model for simulation |