Explicit Interaction Community Models
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Documentation for package ‘eicm’ version 1.0.3
Help Pages
| eicm-package | eicm: Explicit Interaction Community Models |
| as.eicm | Define a parameterized EICM model |
| coef.eicm | Extract EICM model coefficients |
| coefficientComparisonPlot | Diagnostic monitor plots for EICM |
| confint.eicm | Confidence intervals for EICM parameters |
| eicm | Fit and select an Explicit Interaction Community Model (EICM) |
| eicm.data | Define a data object for a EICM model |
| eicm.fit | Estimate a EICM model |
| eicm.matrix | Define a model object for a EICM model |
| eicm.options | Set EICM fitting options |
| generateEICM | Generate EICM model following a Beta frequency distribution |
| interactionPlot | Compare two interaction matrices |
| isCyclic | Is the adjacency matrix a cyclic graph? |
| logLik.eicm | EICM (penalized) log-likelihood |
| plot.confint.eicm | Plot EICM estimates and confidence intervals |
| plot.eicm | Quick plot EICM results |
| plot.eicm.list | Quick plot EICM results |
| plot.profile.eicm | Plot EICM likelihood profile |
| plotNetworkFromMatrix | Plot graphs from adjacency matrices |
| predict.eicm | Predict method for EICM fits |
| print.eicm.matrix | Print EICM model matrix |
| profile.eicm | Likelihood profiles for EICMs |
| truemodel | A parameterized EICM model for simulation |