add_animation |
Add mode bar button to rotate the plot |
boxplot_trio |
Boxplot to compare groups |
calc_pvals |
Calculate one-way test and pairwise tests |
calc_stats_2x3 |
Calculate p-values for 2x3-way analysis |
deseq_2x3 |
2 x 3 factor DESeq2 analysis |
deseq_2x3_polar |
Convert 2x3 design DESeq2 objects to a volcano3d object |
deseq_polar |
Convert DESeq2 objects to a volcano3d object |
forest_ggplot |
Forest plot individual gene from 2x3 factor analysis |
forest_plot |
Forest plot individual gene from 2x3 factor analysis |
forest_plotly |
Forest plot individual gene from 2x3 factor analysis |
grid-class |
An S4 class to define the polar grid coordinates system. |
polar_coords |
Coordinates for Three Way Polar Plot |
polar_coords_2x3 |
Coordinates for three way polar plot from 2x3 factor analysis |
polar_grid |
Grid required for 3D volcano plot and 2D radial plots |
radial_ggplot |
'Ggplot' for Three Way Polar Plot |
radial_plotly |
Three-way radial comparison Polar Plot (using plotly) |
show_grid |
Plots grid objects for inspection using plotly |
significance_subset |
Extract a subset population |
syn_example_meta |
PEAC synovial sample data |
syn_example_rld |
PEAC synovial gene expression data |
volc3d-class |
An S4 class to define the polar coordinates. |
volcano3D |
Three-Dimensional Volcano Plot |
voom_polar |
Convert RNA-Seq count data to a volcano3d object using 'limma voom' |