emdbook-package |
Support Functions and Data for "Ecological Models and Data" |
apply2d |
Apply a function to a combination of vectors |
as.mcmc.bugs |
Convert WinBUGS output to CODA format |
axis.scinot |
Scientific notation as LaTeX/expression() |
BetaBinomial |
Beta-binomial distribution |
calcslice |
Negative log-likelihood slice |
contour3d |
Superimpose contour lines on a 3D plot |
curve3d |
Plot a 3D surface representing a 2D curve |
Damselfish |
Reef fish (damselfish) data |
DamselRecruitment |
Reef fish (damselfish) data |
DamselRecruitment_sum |
Reef fish (damselfish) data |
DamselSettlement |
Reef fish (damselfish) data |
dbetabinom |
Beta-binomial distribution |
dchibarsq |
Mixed chi-squared distributions |
deltamethod |
Delta method functions |
deltavar |
Delta method functions |
dmvnorm |
Multivariate normal distribution density function |
dzinbinom |
Zero-inflated negative binomial distribution |
emdbook |
Support Functions and Data for "Ecological Models and Data" |
Fir |
Data on fir (Abies) life history |
FirDBHFec |
Data on fir (Abies) life history |
FirDBHFec_sum |
Data on fir (Abies) life history |
get.emdbook.packages |
install and update auxiliary packages |
GobySurvival |
Goby (reef fish) survivorship data |
gridsearch2d |
Graphical grid search in 2D |
HPDregionplot |
Plot highest posterior density region |
lambertW |
Lambert W function |
lambertW_base |
Lambert W function |
Lily |
Glacier lily occurrence and fecundity data |
Lily_sum |
Glacier lily occurrence and fecundity data |
lseq |
Log-spaced sequence |
lump.mcmc.list |
Utility functions for mcmc objects |
lWasymp |
Lambert W function |
metropSB |
Metropolis-Szymura-Barton algorithm |
Myxo |
Myxomatosis titer data |
MyxoTiter_sum |
Myxomatosis titer data |
ncredint |
Calculate Bayesian credible intervals |
pchibarsq |
Mixed chi-squared distributions |
perturb.params |
Create a list of perturbed parameters |
qchibarsq |
Mixed chi-squared distributions |
rbetabinom |
Beta-binomial distribution |
rchibarsq |
Mixed chi-squared distributions |
Reedfrog |
Data on reed frog predation experiments |
ReedfrogFuncresp |
Data on reed frog predation experiments |
ReedfrogPred |
Data on reed frog predation experiments |
ReedfrogSizepred |
Data on reed frog predation experiments |
rzinbinom |
Zero-inflated negative binomial distribution |
scinot |
Scientific notation as LaTeX/expression() |
SeedPred |
Seed predation data set from Duncan and Duncan 2000 |
SeedPred_mass |
Seed predation data set from Duncan and Duncan 2000 |
SeedPred_wide |
Seed predation data set from Duncan and Duncan 2000 |
tcredint |
Calculate Bayesian credible intervals |
traceplot.mcmc |
Deprecated (obsolete) functions |
trcoef |
Transform coefficients |
update.bmb.packages |
install and update auxiliary packages |