allele1 |
Allele plot for SNPs, alleles and allele pairs |
autoplot.allele1 |
Allele plot for SNPs, alleles and allele pairs |
autoplot.feature_tbl |
Summary of features |
autoplot.gene_exon |
Get exons for set of genes |
autoplot.merge_feature |
Plot of merge_feature object |
autoplot.scan1pattern |
Plot scan pattern usign ggplot2 |
create_probs_query_func |
Create a function to query genotype probabilities |
gene_exon |
Get exons for set of genes |
genoprob_to_patternprob |
Collapse genoprob according to pattern |
get.gene.locations |
Helper function to set gene locations on plot. |
get_feature_snp |
Match features with SNPs |
get_gene_snp |
Match genes with SNPs |
ggplot_allele1 |
Allele plot for SNPs, alleles and allele pairs |
ggplot_feature_tbl |
Summary of features |
ggplot_gene_exon |
Get exons for set of genes |
ggplot_merge_feature |
Plot of merge_feature object |
ggplot_scan1pattern |
Plot scan pattern usign ggplot2 |
merge_feature |
Plot of merge_feature object |
pattern_diplos |
Extract pattern of diplotypes |
pattern_haplos |
Extract pattern of diplotypes |
pattern_label |
Turn genotype probabilities into labels |
pattern_sdp |
Turn genotype probabilities into labels |
read_fast |
Read fast database with possible rownames |
read_probs |
Read genotype probability object from file |
scan1pattern |
Plot scan pattern usign ggplot2 |
sdp_to_logical |
Convert sdp to pattern |
sdp_to_pattern |
Convert sdp to pattern |
snpinfo_to_map |
Convert SNP info to map |
snpprob_collapse |
Collapse genoprob according to pattern |
subset.feature_tbl |
Summary of features |
subset.gene_exon |
Get exons for set of genes |
subset.top_snps_pattern |
Top SNPs organized by allele pattern |
summary.feature_snp |
Summary of features with SNP information |
summary.feature_tbl |
Summary of features |
summary.gene_exon |
Get exons for set of genes |
summary.gene_snp |
Summary of genes overlapping SNPs |
summary.merge_feature |
Plot of merge_feature object |
summary.scan1pattern |
Plot scan pattern usign ggplot2 |
summary.top_snps_pattern |
Top SNPs organized by allele pattern |
top_snps_pattern |
Top SNPs organized by allele pattern |