Multivariate and Functional Spatial Scan Statistics

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Documentation for package ‘HDSpatialScan’ version 1.0.4

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HDSpatialScan-package Multivariate and Functional Spatial Scan Statistics
clusters Creation of the matrix of potential clusters
DFFSS DFFSS scan procedure
dfree Index for the UG scan procedure
dfree_index_multi Index for the MDFFSS scan procedure
FinScan Finalization of the scan procedures
fmulti_data Multivariate functional data
funi_data Univariate functional data
HDSpatialScan Multivariate and Functional Spatial Scan Statistics
InitScan Initalization of the scan procedures by creating the matrix of potential clusters
map_sites Spatial object corresponding to the sites of the data of the package HDSpatialScan
MDFFSS MDFFSS scan procedure
MG MG scan procedure
MNP MNP scan procedure
MPFSS MPFSS scan procedure
MRBFSS MRBFSS scan procedure
multi_data Multivariate non-functional data
multi_fWMW Index for the NPFSS scan procedure (multivariate functional case)
multi_gaussian Index for the MG scan procedure
multi_signs_matrix List of matrix of signs (multivariate functional data)
multi_WMW Index for the MNP scan procedure
non_overlap Return only the detected clusters with no overlapping in their order of detection
NPFSS NPFSS scan procedure (univariate functional or multivariate functional)
permutate Permutates the data
PFSS PFSS scan procedure
plot.ResScanOutput Schema or map of the clusters
plotCurves Generic function to plot curves
plotCurves.ResScanOutputMultiFunct Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotCurves.ResScanOutputUniFunct Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)
plotSummary Generic function to plot a summary
plotSummary.ResScanOutputMulti Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)
plotSummary.ResScanOutputMultiFunct Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)
plotSummary.ResScanOutputUniFunct Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)
plot_map Map of circular clusters
plot_map2 Map of the clusters
plot_schema Schema of the clusters
pointwise_dfree Index for the DFFSS scan procedure
pointwise_wmw_multi Index for the MRBFSS scan procedure
pointwise_wmw_uni Index for the URBFSS scan procedure
post_filt_area A posteriori filtering on the area
post_filt_nb_sites A posteriori filtering on the number of sites/individuals
post_filt_radius A posteriori filtering on the radius
print.ResScanOutput Prints a result of a scan procedure
ResScanOutput Constructor function for objects of the ResScanOutput class
ResScanOutputMulti Constructor function for objects of the ResScanOutputMulti class
ResScanOutputMultiFunct Constructor function for objects of the ResScanOutputMultiFunct class
ResScanOutputUni Constructor function for objects of the ResScanOutputUni class
ResScanOutputUniFunct Constructor function for objects of the ResScanOutputUniFunct class
SpatialScan Spatial scan procedure
summary.ResScanOutputMulti Summary of the clusters obtained with a multivariate scan function (MG or MNP).
summary.ResScanOutputMultiFunct Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).
summary.ResScanOutputUni Summary of the clusters obtained with a univariate scan function (UG or UNP).
summary.ResScanOutputUniFunct Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).
transform_data Computation of the multivariate functional ranks
UG UG scan procedure
uni_fWMW Index for the NPFSS scan procedure (univariate functional case)
uni_signs_matrix Computation of the matrix of signs
UNP UNP scan procedure
URBFSS URBFSS scan procedure
wmw_uni Index for the UNP scan procedure