A Computational Pipeline for Bulk 'ATAC-Seq' Profiles


[Up] [Top]

Documentation for package ‘cinaR’ version 0.2.1

Help Pages

annotatePeaks annotatePeaks
bed Example peaks from bone marrow of B6 mice
cinaR cinaR
color_values color values
differentialAnalyses Differential Analyses
dot_plot dot_plot
filterConsensus filterConsensus
grch37 Grch37
grch38 Grch38
grcm38 Grcm38
GSEA GSEA
heatmap_differential heatmap_differential
heatmap_var_peaks heatmap_var_peaks
HPEA HPEA
mouse2human mouse2human
normalizeConsensus normalizeConsensus
pca_plot pca_plot
run_enrichment run_enrichment
scale_rows scale_rows
show_comparisons show_comparisons
verboseFn verboseFn
vp2008 Immune modules