A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
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Documentation for package ‘cinaR’ version 0.2.3
Help Pages
| annotatePeaks | annotatePeaks |
| bed | Example peaks from bone marrow of B6 mice |
| cinaR | cinaR |
| color_values | color values |
| differentialAnalyses | Differential Analyses |
| dot_plot | dot_plot |
| filterConsensus | filterConsensus |
| grch37 | Grch37 |
| grch38 | Grch38 |
| grcm38 | Grcm38 |
| GSEA | GSEA |
| heatmap_differential | heatmap_differential |
| heatmap_var_peaks | heatmap_var_peaks |
| HPEA | HPEA |
| normalizeConsensus | normalizeConsensus |
| pca_plot | pca_plot |
| run_enrichment | run_enrichment |
| scale_rows | scale_rows |
| show_comparisons | show_comparisons |
| verboseFn | verboseFn |
| vp2008 | Immune modules |