CCMN and Other Normalization Methods for Metabolomics Data

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Documentation for package ‘crmn’ version 0.0.21

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

crmn-package	CRMN
analytes	Accessor for the analytes
analytes-method	Accessor for the analytes
analytes-method	Accessor for the analytes
analytes_eset	Accessor for the analytes
analytes_other	Accessor for the analytes
crmn	CRMN
dropunusedlevels	Drop unused levels
makeX	Make X
makeX-method	Make X
makeX-methods	Make X
method	Accessor for the method
method-method	Accessor for the method
method-methods	Accessor for the method
mexprs	Matrix safe accessor of expression slot
mexprs-method	Matrix safe accessor of expression slot
mexprs-methods	Matrix safe accessor of expression slot
mexprs-rep-methods	Accessor
mexprs<-	Accessor
mexprs<--method	Accessor
mix	Dilution mixture dataset.
model	Accessor for the model
model-method	Accessor for the model
model-methods	Accessor for the model
nFit	Normalization model
nFit-class	Normalization model
normalize	Normalize a metabolomics dataset
normFit	Fit a normalization model
normPred	Predict for normalization
pcaMuffle	Muffle the pca function
plot-method	Plot a statistics for CRMN normalization model
plot.nFit	Plot a statistics for CRMN normalization model
sFit	Accessor for the standards model
sFit-method	Accessor for the standards model
show	Show method for nFit
show-method	Show method for nFit
show_nfit	Show nfit
standards	Accessor for the Internal Standards
standards-method	Accessor for the Internal Standards
standards-method	Accessor for the Internal Standards
standardsFit	Standards model
standardsPred	Predict effect for new data (or get fitted data)
standards_eset	Accessor for the Internal Standards
standards_other	Accessor for the Internal Standards
weightnorm	Normalize by sample weight