epigrowthfit-package |
R Package 'epigrowthfit' |
as.list.coef.egf |
Extract Coefficients and Random Effect Covariance Parameters |
coef.egf |
Extract Coefficients and Random Effect Covariance Parameters |
coef.egf_no_fit |
Extract Coefficients and Random Effect Covariance Parameters |
coef.simulate.egf_model |
Simulating Incidence Time Series |
confint.egf |
Confidence Intervals |
confint.fitted.egf |
Fitted Values |
confint.predict.egf |
Predicted Values |
confint.profile.egf |
Univariate Likelihood Profiles |
cov2theta |
Compute a Packed Representation of a Covariance Matrix |
covid19.ontario |
COVID-19 in Ontario, Canada |
df.residual.egf |
Extract the Residual Degrees of Freedom |
df.residual.egf_no_fit |
Extract the Residual Degrees of Freedom |
dgi |
Generation Interval Distribution |
egf |
Fit Nonlinear Mixed Effects Models of Epidemic Growth |
egf-class |
Description of Objects of Class 'egf' |
egf.egf_model |
Fit Nonlinear Mixed Effects Models of Epidemic Growth |
egf.simulate.egf_model |
Simulating Incidence Time Series |
egf_control |
Define Control Parameters |
egf_control_plot |
Define Control Parameters for Plotting |
egf_has_converged |
Test for Convergence |
egf_has_random |
Test for Random Effects |
egf_model |
Define a Top Level Nonlinear Model |
egf_optimizer |
Define an Optimization Method |
egf_parallel |
Define a Parallelization Method |
egf_prior |
Prior Distributions |
egf_top |
Top Level Nonlinear Model Parameter Names |
egf_top.egf |
Top Level Nonlinear Model Parameter Names |
egf_top.egf_model |
Top Level Nonlinear Model Parameter Names |
egf_top.egf_no_fit |
Top Level Nonlinear Model Parameter Names |
epigrowthfit |
R Package 'epigrowthfit' |
epigrowthfit-defunct |
Defunct Functions in Package 'epigrowthfit' |
epigrowthfit-deprecated |
Deprecated Functions in Package 'epigrowthfit' |
epigrowthfit-notyet |
Not Yet Implemented Functions in Package 'epigrowthfit' |
extractAIC.egf |
Extract the (Generalized) AIC |
finalsize |
Compute the Expected Epidemic Final Size |
fitted.egf |
Fitted Values |
fitted.egf_no_fit |
Fitted Values |
fixef |
Details about Fixed Effect Coefficients |
fixef.egf |
Details about Fixed Effect Coefficients |
fixef.egf_no_fit |
Details about Fixed Effect Coefficients |
formula.egf |
Extract Model Formulae |
formula.egf_no_fit |
Extract Model Formulae |
getCall.egf |
Extract Model Calls |
getCall.egf_no_fit |
Extract Model Calls |
getCall.simulate.egf_model |
Simulating Incidence Time Series |
gi |
Generation Interval Distribution |
InverseWishart |
Prior Distributions |
labels.coef.egf |
Extract Coefficients and Random Effect Covariance Parameters |
LKJ |
Prior Distributions |
logLik.egf |
Extract the Log (Marginal) Likelihood |
model.frame.egf |
Extract Model Frames |
model.frame.egf_no_fit |
Extract Model Frames |
model.matrix.egf |
Extract Design Matrices |
model.matrix.egf_no_fit |
Extract Design Matrices |
nobs.egf |
Extract the Number of Observations |
nobs.egf_no_fit |
Extract the Number of Observations |
Normal |
Prior Distributions |
pgi |
Generation Interval Distribution |
plot.confint.egf |
Confidence Intervals |
plot.egf |
Plot Nonlinear Mixed Effects Models of Epidemic Growth |
plot.profile.egf |
Univariate Likelihood Profiles |
predict.egf |
Predicted Values |
print.coef.egf |
Extract Coefficients and Random Effect Covariance Parameters |
print.egf |
Printing Model Objects |
print.summary.egf |
Model Summaries |
profile.egf |
Univariate Likelihood Profiles |
qgi |
Generation Interval Distribution |
R0 |
Compute the Basic Reproduction Number |
ranef |
Details about Random Effect Coefficients |
ranef.egf |
Details about Random Effect Coefficients |
ranef.egf_no_fit |
Details about Random Effect Coefficients |
rgi |
Generation Interval Distribution |
simulate.egf |
Simulation and Parametric Bootstrapping |
simulate.egf_model |
Simulating Incidence Time Series |
summary.egf |
Model Summaries |
terms.egf |
Model Terms |
terms.egf_no_fit |
Model Terms |
theta2cov |
Compute a Packed Representation of a Covariance Matrix |
timescale |
Compute the Characteristic Time Scale |
vcov.egf |
Model Covariance Matrices |
Wishart |
Prior Distributions |