AIC.moveHMM |
AIC |
angleCI |
Confidence intervals for angle parameters |
CI |
Confidence intervals |
dexp_rcpp |
Exponential density function |
dgamma_rcpp |
Gamma density function |
dlnorm_rcpp |
Log-normal density function |
dvm_rcpp |
Von Mises density function |
dweibull_rcpp |
Weibull density function |
dwrpcauchy_rcpp |
Wrapped Cauchy density function |
elk_data |
Elk data set from Morales et al. (2004, Ecology) |
example |
Example dataset |
exGen |
Example data simulation |
fitHMM |
Fit an HMM to the data |
getPalette |
Discrete colour palette for states |
getPlotData |
Data to produce plots of fitted model |
haggis_data |
Wild haggis data set from Michelot et al. (2016, Methods Eco Evol) |
is.moveData |
Is moveData |
is.moveHMM |
Is moveHMM |
logAlpha |
Forward log-probabilities |
logBeta |
Backward log-probabilities |
moveData |
Constructor of 'moveData' objects |
moveHMM |
Constructor of 'moveHMM' objects |
n2w |
Scaling function: natural to working parameters. |
nLogLike |
Negative log-likelihood function |
nLogLike_rcpp |
Negative log-likelihood |
parDef |
Parameters definition |
plot.moveData |
Plot 'moveData' |
plot.moveHMM |
Plot 'moveHMM' |
plotPR |
Plot pseudo-residuals |
plotSat |
Plot observations on satellite image |
plotStates |
Plot states |
plotStationary |
Plot stationary state probabilities |
predictStationary |
Predict stationary state probabilities |
predictTPM |
Predict transition probabilities for new covariate values |
prepData |
Preprocessing of the tracking data |
print.moveHMM |
Print 'moveHMM' |
pseudoRes |
Pseudo-residuals |
simData |
Simulation tool |
stateProbs |
State probabilities |
stationary |
Stationary state probabilities |
summary.moveData |
Summary 'moveData' |
trMatrix_rcpp |
Transition probability matrix |
turnAngle |
Turning angle |
viterbi |
Viterbi algorithm |
w2n |
Scaling function: working to natural parameters |