Diagnostics for Pharmacometric Models

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Documentation for package ‘xpose’ version 0.4.18

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

absval_res_vs_idv	Residuals plotted against the independent variable
absval_res_vs_pred	Residuals plotted against population predictions
amt_vs_idv	Compartment kinetics
cov_distrib	Distribution plots of ETA and parameters
cov_qq	QQ plots of ETA and residuals
data_opt	Create options for data import
distinct.xpose_data	Subset datasets in an xpdb
distrib_plot	Distribution plots of ETA and parameters
dv_preds_vs_idv	Observations and model predictions plotted against the independent variable
dv_vs_idv	Observations and model predictions plotted against the independent variable
dv_vs_ipred	Observations plotted against model predictions
dv_vs_pred	Observations plotted against model predictions
eta_distrib	Distribution plots of ETA and parameters
eta_qq	QQ plots of ETA and residuals
filter.xpose_data	Subset datasets in an xpdb
get_code	Access model code
get_data	Access model output table data
get_file	Access model output file data
get_prm	Access model parameters
get_special	Access special model data
get_summary	Access model summary data
gg_themes	An additional set of themes for ggplot2
grd_vs_iteration	Parameter value or gradient vs. iterations
group_by.xpose_data	Group/ungroup and summarize variables in an xpdb
ind_plots	Observations, individual predictions and population predictions plotted against the independent variable for every individual
ipred_vs_idv	Observations and model predictions plotted against the independent variable
irep	Add simulation counter
list_data	List available datasets
list_files	List available datasets
list_nm_tables	List NONMEM output tables
list_special	List available datasets
list_vars	List available variables
list_xpdb	List available datasets
manual_nm_import	Manually define nonmem tables to be imported
minimization_plots	Parameter value or gradient vs. iterations
modify_xpdb	Add, remove or rename variables in an xpdb
mutate.xpose_data	Add, remove or rename variables in an xpdb
pred_vs_idv	Observations and model predictions plotted against the independent variable
print.xpose_data	Print an xpose_data object
print.xpose_plot	Draw an xpose_plot object
prm_distrib	Distribution plots of ETA and parameters
prm_qq	QQ plots of ETA and residuals
prm_table	Display a parameter estimates to the console
prm_vs_iteration	Parameter value or gradient vs. iterations
qq_plot	QQ plots of ETA and residuals
read_nm_files	NONMEM output file import function
read_nm_model	NONMEM model file parser
read_nm_tables	NONMEM output table import function
rename.xpose_data	Add, remove or rename variables in an xpdb
res_distrib	Distribution plots of ETA and parameters
res_qq	QQ plots of ETA and residuals
res_vs_idv	Residuals plotted against the independent variable
res_vs_pred	Residuals plotted against population predictions
select.xpose_data	Add, remove or rename variables in an xpdb
set_vars	Set variable type, label or units
set_var_labels	Set variable type, label or units
set_var_types	Set variable type, label or units
set_var_units	Set variable type, label or units
slice.xpose_data	Subset datasets in an xpdb
subset_xpdb	Subset datasets in an xpdb
summarise.xpose_data	Group/ungroup and summarize variables in an xpdb
summarise_xpdb	Group/ungroup and summarize variables in an xpdb
summarize.xpose_data	Group/ungroup and summarize variables in an xpdb
summary.xpose_data	Summarizing xpose_data
template_titles	Template titles
theme_bw2	An additional set of themes for ggplot2
theme_readable	An additional set of themes for ggplot2
theme_xp_default	A set of xpose themes
theme_xp_xpose4	A set of xpose themes
ungroup.xpose_data	Group/ungroup and summarize variables in an xpdb
update_themes	Create xpose theme
vpc	Visual predictive checks
vpc_data	Visual predictive checks data
vpc_opt	Generate a list of options for VPC data generation
xpdb_ex_pk	'xpose_data' examples
xplot_distrib	Default xpose distribution plot function
xplot_qq	Default xpose QQ plot function
xplot_scatter	Default xpose scatter plot function
xpose_data	Import NONMEM output into R
xpose_save	Save xpose plot
xp_themes	A set of xpose themes