Multi-Omic Integration via Sparse Singular Value Decomposition

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Documentation for package ‘MOSS’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

aest.f	Assign point color and shape aesthetics.
cov_adj	Adjust omic blocks for covariates effects.
metdat	Extracts (and merges) chunks of characters.
moss	Multi-Omic integration via Sparse Singular value decomposition.
moss_heatmap	Creates a heatmap from the output of MOSS.
moss_select	Returns features and subject selected by latent dimension.
moss_signatures	Returns signatures of features by groups of subjects
moss_venn	Useful Venn diagrams to study the overlap between samples row names.
pca2tsne	Mapping principal components onto a 2D map via tSNE.
prepro_na	Missing values imputation by the mean of each column.
prepro_sub	Scale and normalize columns of a matrix.
simulate_data	Simple simulation of regulatory modules.
ssvdEN	Sparse Singular Value Decomposition via Elastic Net.
ssvdEN_sol_path	'Solution path' for sparse Singular Value Decomposition via Elastic Net.
ssvdEN_sol_path_par	'Solution path' for sparse Singular Value Decomposition via Elastic Net using parallel computing.
tsne2clus	t-Stochastic Neighbor Embedding to Clusters